Gene : CAB2 A. thaliana TAIR10
Primary Identifier:  ? AT1G29920 Defline:  (1 of 5) K08912 - light-harvesting complex II chlorophyll a/b binding protein 1 (LHCB1)
Genomic Order:  2956 Name:  ? AT1G29920
Secondary Identifier:  ? PAC:19655097
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0 Pathways

Genomics

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Expression

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3 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT1G29920 0.5kb upstream 0.5kb upstream 1676 true Chr1: 10474784-10476459 Arabidopsis thaliana
AT1G29920 0.5kb upstream 0.5kb upstream 500 false Chr1: 10475960-10476459 Arabidopsis thaliana
AT1G29920 0.5kb downstream 0.5kb downstream 1676 true Chr1: 10474284-10475959 Arabidopsis thaliana
AT1G29920 0.5kb downstream 0.5kb downstream 500 false Chr1: 10474284-10474783 Arabidopsis thaliana
AT1G29920 1.0kb upstream 1.0kb upstream 2176 true Chr1: 10474784-10476959 Arabidopsis thaliana
AT1G29920 1.0kb upstream 1.0kb upstream 1000 false Chr1: 10475960-10476959 Arabidopsis thaliana
AT1G29920 1.0kb downstream 1.0kb downstream 2176 true Chr1: 10473784-10475959 Arabidopsis thaliana
AT1G29920 1.0kb downstream 1.0kb downstream 1000 false Chr1: 10473784-10474783 Arabidopsis thaliana
AT1G29920 2.0kb upstream 2.0kb upstream 3176 true Chr1: 10474784-10477959 Arabidopsis thaliana
AT1G29920 2.0kb upstream 2.0kb upstream 2000 false Chr1: 10475960-10477959 Arabidopsis thaliana
AT1G29920 2.0kb downstream 2.0kb downstream 3176 true Chr1: 10472784-10475959 Arabidopsis thaliana
AT1G29920 2.0kb downstream 2.0kb downstream 2000 false Chr1: 10472784-10474783 Arabidopsis thaliana
AT1G29920 5.0kb upstream 5.0kb upstream 6176 true Chr1: 10474784-10480959 Arabidopsis thaliana
AT1G29920 5.0kb upstream 5.0kb upstream 5000 false Chr1: 10475960-10480959 Arabidopsis thaliana
AT1G29920 5.0kb downstream 5.0kb downstream 6176 true Chr1: 10469784-10475959 Arabidopsis thaliana
AT1G29920 5.0kb downstream 5.0kb downstream 5000 false Chr1: 10469784-10474783 Arabidopsis thaliana
AT1G29920 10.0kb upstream 10.0kb upstream 11176 true Chr1: 10474784-10485959 Arabidopsis thaliana
AT1G29920 10.0kb upstream 10.0kb upstream 10000 false Chr1: 10475960-10485959 Arabidopsis thaliana
AT1G29920 10.0kb downstream 10.0kb downstream 11176 true Chr1: 10464784-10475959 Arabidopsis thaliana
AT1G29920 10.0kb downstream 10.0kb downstream 10000 false Chr1: 10464784-10474783 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122379914 5261 Brassicaceae View MSA
123837903 5264 Brassicales-Malvales View MSA
124347417 5266 SBM View MSA
124244902 5268 Malvidae View MSA
124072480 5270 Rosid View MSA
123751711 5271 Pentapetalae View MSA
122794402 5272 Eudicot View MSA
122050341 5273 Angiosperm View MSA
121349648 5274 Embryophyte View MSA
123426313 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 303.418     High  
cufflinks 0.233     Low Low
cufflinks 2123.664     High High
cufflinks 0.611        
cufflinks 3046.956     High High
cufflinks 0.72        

0 Strain