Gene : AT1G33420 A. thaliana TAIR10
Defline:  (1 of 1) PTHR15856//PTHR15856:SF28 - PHD FINGER PROTEIN 20-RELATED // SUBFAMILY NOT NAMED Genomic Order:  3301
Name:  ? AT1G33420 Secondary Identifier:  ? PAC:19656955
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT1G33420 0.5kb upstream 0.5kb upstream 3191 true Chr1: 12120886-12124076 Arabidopsis thaliana
AT1G33420 0.5kb upstream 0.5kb upstream 500 false Chr1: 12123577-12124076 Arabidopsis thaliana
AT1G33420 0.5kb downstream 0.5kb downstream 3191 true Chr1: 12120386-12123576 Arabidopsis thaliana
AT1G33420 0.5kb downstream 0.5kb downstream 500 false Chr1: 12120386-12120885 Arabidopsis thaliana
AT1G33420 1.0kb upstream 1.0kb upstream 3691 true Chr1: 12120886-12124576 Arabidopsis thaliana
AT1G33420 1.0kb upstream 1.0kb upstream 1000 false Chr1: 12123577-12124576 Arabidopsis thaliana
AT1G33420 1.0kb downstream 1.0kb downstream 3691 true Chr1: 12119886-12123576 Arabidopsis thaliana
AT1G33420 1.0kb downstream 1.0kb downstream 1000 false Chr1: 12119886-12120885 Arabidopsis thaliana
AT1G33420 2.0kb upstream 2.0kb upstream 4691 true Chr1: 12120886-12125576 Arabidopsis thaliana
AT1G33420 2.0kb upstream 2.0kb upstream 2000 false Chr1: 12123577-12125576 Arabidopsis thaliana
AT1G33420 2.0kb downstream 2.0kb downstream 4691 true Chr1: 12118886-12123576 Arabidopsis thaliana
AT1G33420 2.0kb downstream 2.0kb downstream 2000 false Chr1: 12118886-12120885 Arabidopsis thaliana
AT1G33420 5.0kb upstream 5.0kb upstream 7691 true Chr1: 12120886-12128576 Arabidopsis thaliana
AT1G33420 5.0kb upstream 5.0kb upstream 5000 false Chr1: 12123577-12128576 Arabidopsis thaliana
AT1G33420 5.0kb downstream 5.0kb downstream 7691 true Chr1: 12115886-12123576 Arabidopsis thaliana
AT1G33420 5.0kb downstream 5.0kb downstream 5000 false Chr1: 12115886-12120885 Arabidopsis thaliana
AT1G33420 10.0kb upstream 10.0kb upstream 12691 true Chr1: 12120886-12133576 Arabidopsis thaliana
AT1G33420 10.0kb upstream 10.0kb upstream 10000 false Chr1: 12123577-12133576 Arabidopsis thaliana
AT1G33420 10.0kb downstream 10.0kb downstream 12691 true Chr1: 12110886-12123576 Arabidopsis thaliana
AT1G33420 10.0kb downstream 10.0kb downstream 10000 false Chr1: 12110886-12120885 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122376429 5261 Brassicaceae View MSA
123830898 5264 Brassicales-Malvales View MSA
124349295 5266 SBM View MSA
124245930 5268 Malvidae View MSA
124069901 5270 Rosid View MSA
123741706 5271 Pentapetalae View MSA
122793317 5272 Eudicot View MSA
122047427 5273 Angiosperm View MSA
121310739 5274 Embryophyte View MSA
123348151 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 5.188        
cufflinks 5.104        
cufflinks 2.534       Low
cufflinks 5.505        
cufflinks 2.87       Low
cufflinks 6.131        

0 Strain