Gene : NPC1 A. thaliana TAIR10
Primary Identifier:  ? AT1G07230 Defline:  (1 of 1) PTHR31956//PTHR31956:SF9 - FAMILY NOT NAMED // NON-SPECIFIC PHOSPHOLIPASE C1
Genomic Order:  657 Name:  ? AT1G07230
Secondary Identifier:  ? PAC:19657529
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Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Athaliana LIPASYN-PWY Arabidopsis thaliana pathologic  

Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT1G07230 0.5kb upstream 0.5kb upstream 3230 true Chr1: 2220253-2223482 Arabidopsis thaliana
AT1G07230 0.5kb upstream 0.5kb upstream 500 false Chr1: 2222983-2223482 Arabidopsis thaliana
AT1G07230 0.5kb downstream 0.5kb downstream 3230 true Chr1: 2219753-2222982 Arabidopsis thaliana
AT1G07230 0.5kb downstream 0.5kb downstream 500 false Chr1: 2219753-2220252 Arabidopsis thaliana
AT1G07230 1.0kb upstream 1.0kb upstream 3730 true Chr1: 2220253-2223982 Arabidopsis thaliana
AT1G07230 1.0kb upstream 1.0kb upstream 1000 false Chr1: 2222983-2223982 Arabidopsis thaliana
AT1G07230 1.0kb downstream 1.0kb downstream 3730 true Chr1: 2219253-2222982 Arabidopsis thaliana
AT1G07230 1.0kb downstream 1.0kb downstream 1000 false Chr1: 2219253-2220252 Arabidopsis thaliana
AT1G07230 2.0kb upstream 2.0kb upstream 4730 true Chr1: 2220253-2224982 Arabidopsis thaliana
AT1G07230 2.0kb upstream 2.0kb upstream 2000 false Chr1: 2222983-2224982 Arabidopsis thaliana
AT1G07230 2.0kb downstream 2.0kb downstream 4730 true Chr1: 2218253-2222982 Arabidopsis thaliana
AT1G07230 2.0kb downstream 2.0kb downstream 2000 false Chr1: 2218253-2220252 Arabidopsis thaliana
AT1G07230 5.0kb upstream 5.0kb upstream 7730 true Chr1: 2220253-2227982 Arabidopsis thaliana
AT1G07230 5.0kb upstream 5.0kb upstream 5000 false Chr1: 2222983-2227982 Arabidopsis thaliana
AT1G07230 5.0kb downstream 5.0kb downstream 7730 true Chr1: 2215253-2222982 Arabidopsis thaliana
AT1G07230 5.0kb downstream 5.0kb downstream 5000 false Chr1: 2215253-2220252 Arabidopsis thaliana
AT1G07230 10.0kb upstream 10.0kb upstream 12730 true Chr1: 2220253-2232982 Arabidopsis thaliana
AT1G07230 10.0kb upstream 10.0kb upstream 10000 false Chr1: 2222983-2232982 Arabidopsis thaliana
AT1G07230 10.0kb downstream 10.0kb downstream 12730 true Chr1: 2210253-2222982 Arabidopsis thaliana
AT1G07230 10.0kb downstream 10.0kb downstream 10000 false Chr1: 2210253-2220252 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122378222 5261 Brassicaceae View MSA
123836705 5264 Brassicales-Malvales View MSA
124346730 5266 SBM View MSA
124245748 5268 Malvidae View MSA
124069439 5270 Rosid View MSA
123747870 5271 Pentapetalae View MSA
122794639 5272 Eudicot View MSA
122048233 5273 Angiosperm View MSA
121345811 5274 Embryophyte View MSA
123380272 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 18.378       High
cufflinks 15.389        
cufflinks 13.894       Low
cufflinks 17.201        
cufflinks 18.178        
cufflinks 15.457        

0 Strain