Gene : AT1G55200 A. thaliana TAIR10
Defline:  (1 of 3) PTHR27001//PTHR27001:SF152 - FAMILY NOT NAMED // GENOMIC DNA, CHROMOSOME 3, P1 CLONE:MMM17-RELATED Genomic Order:  4571
Name:  ? AT1G55200 Secondary Identifier:  ? PAC:19653531
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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT1G55200 0.5kb upstream 0.5kb upstream 3435 true Chr1: 20589129-20592563 Arabidopsis thaliana
AT1G55200 0.5kb upstream 0.5kb upstream 500 false Chr1: 20592064-20592563 Arabidopsis thaliana
AT1G55200 0.5kb downstream 0.5kb downstream 3435 true Chr1: 20588629-20592063 Arabidopsis thaliana
AT1G55200 0.5kb downstream 0.5kb downstream 500 false Chr1: 20588629-20589128 Arabidopsis thaliana
AT1G55200 1.0kb upstream 1.0kb upstream 3935 true Chr1: 20589129-20593063 Arabidopsis thaliana
AT1G55200 1.0kb upstream 1.0kb upstream 1000 false Chr1: 20592064-20593063 Arabidopsis thaliana
AT1G55200 1.0kb downstream 1.0kb downstream 3935 true Chr1: 20588129-20592063 Arabidopsis thaliana
AT1G55200 1.0kb downstream 1.0kb downstream 1000 false Chr1: 20588129-20589128 Arabidopsis thaliana
AT1G55200 2.0kb upstream 2.0kb upstream 4935 true Chr1: 20589129-20594063 Arabidopsis thaliana
AT1G55200 2.0kb upstream 2.0kb upstream 2000 false Chr1: 20592064-20594063 Arabidopsis thaliana
AT1G55200 2.0kb downstream 2.0kb downstream 4935 true Chr1: 20587129-20592063 Arabidopsis thaliana
AT1G55200 2.0kb downstream 2.0kb downstream 2000 false Chr1: 20587129-20589128 Arabidopsis thaliana
AT1G55200 5.0kb upstream 5.0kb upstream 7935 true Chr1: 20589129-20597063 Arabidopsis thaliana
AT1G55200 5.0kb upstream 5.0kb upstream 5000 false Chr1: 20592064-20597063 Arabidopsis thaliana
AT1G55200 5.0kb downstream 5.0kb downstream 7935 true Chr1: 20584129-20592063 Arabidopsis thaliana
AT1G55200 5.0kb downstream 5.0kb downstream 5000 false Chr1: 20584129-20589128 Arabidopsis thaliana
AT1G55200 10.0kb upstream 10.0kb upstream 12935 true Chr1: 20589129-20602063 Arabidopsis thaliana
AT1G55200 10.0kb upstream 10.0kb upstream 10000 false Chr1: 20592064-20602063 Arabidopsis thaliana
AT1G55200 10.0kb downstream 10.0kb downstream 12935 true Chr1: 20579129-20592063 Arabidopsis thaliana
AT1G55200 10.0kb downstream 10.0kb downstream 10000 false Chr1: 20579129-20589128 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121502739 5273 Angiosperm View MSA
122343521 5261 Brassicaceae View MSA
123783698 5264 Brassicales-Malvales View MSA
124281916 5266 SBM View MSA
124136591 5268 Malvidae View MSA
123864429 5270 Rosid View MSA
123449741 5271 Pentapetalae View MSA
122485271 5272 Eudicot View MSA
121351058 5274 Embryophyte View MSA
123381993 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.79       High
cufflinks 0.599        
cufflinks 0.79       High
cufflinks 0.494       Low
cufflinks 0.592        
cufflinks 0.519        

0 Strain