Gene : AMSH1 A. thaliana TAIR10
Primary Identifier:  ? AT1G48790 Defline:  (1 of 1) PTHR12947//PTHR12947:SF10 - AMSH // AMSH-LIKE UBIQUITIN THIOESTERASE 1
Genomic Order:  3908 Name:  ? AT1G48790
Secondary Identifier:  ? PAC:19654611
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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT1G48790 0.5kb upstream 0.5kb upstream 4488 true Chr1: 18043672-18048159 Arabidopsis thaliana
AT1G48790 0.5kb upstream 0.5kb upstream 500 false Chr1: 18047660-18048159 Arabidopsis thaliana
AT1G48790 0.5kb downstream 0.5kb downstream 4488 true Chr1: 18043172-18047659 Arabidopsis thaliana
AT1G48790 0.5kb downstream 0.5kb downstream 500 false Chr1: 18043172-18043671 Arabidopsis thaliana
AT1G48790 1.0kb upstream 1.0kb upstream 4988 true Chr1: 18043672-18048659 Arabidopsis thaliana
AT1G48790 1.0kb upstream 1.0kb upstream 1000 false Chr1: 18047660-18048659 Arabidopsis thaliana
AT1G48790 1.0kb downstream 1.0kb downstream 4988 true Chr1: 18042672-18047659 Arabidopsis thaliana
AT1G48790 1.0kb downstream 1.0kb downstream 1000 false Chr1: 18042672-18043671 Arabidopsis thaliana
AT1G48790 2.0kb upstream 2.0kb upstream 5988 true Chr1: 18043672-18049659 Arabidopsis thaliana
AT1G48790 2.0kb upstream 2.0kb upstream 2000 false Chr1: 18047660-18049659 Arabidopsis thaliana
AT1G48790 2.0kb downstream 2.0kb downstream 5988 true Chr1: 18041672-18047659 Arabidopsis thaliana
AT1G48790 2.0kb downstream 2.0kb downstream 2000 false Chr1: 18041672-18043671 Arabidopsis thaliana
AT1G48790 5.0kb upstream 5.0kb upstream 8988 true Chr1: 18043672-18052659 Arabidopsis thaliana
AT1G48790 5.0kb upstream 5.0kb upstream 5000 false Chr1: 18047660-18052659 Arabidopsis thaliana
AT1G48790 5.0kb downstream 5.0kb downstream 8988 true Chr1: 18038672-18047659 Arabidopsis thaliana
AT1G48790 5.0kb downstream 5.0kb downstream 5000 false Chr1: 18038672-18043671 Arabidopsis thaliana
AT1G48790 10.0kb upstream 10.0kb upstream 13988 true Chr1: 18043672-18057659 Arabidopsis thaliana
AT1G48790 10.0kb upstream 10.0kb upstream 10000 false Chr1: 18047660-18057659 Arabidopsis thaliana
AT1G48790 10.0kb downstream 10.0kb downstream 13988 true Chr1: 18033672-18047659 Arabidopsis thaliana
AT1G48790 10.0kb downstream 10.0kb downstream 10000 false Chr1: 18033672-18043671 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122370308 5261 Brassicaceae View MSA
123827477 5264 Brassicales-Malvales View MSA
124343391 5266 SBM View MSA
124238982 5268 Malvidae View MSA
124064531 5270 Rosid View MSA
123740855 5271 Pentapetalae View MSA
122786605 5272 Eudicot View MSA
122049356 5273 Angiosperm View MSA
121351478 5274 Embryophyte View MSA
123425499 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 13.113        
cufflinks 13.578        
cufflinks 10.312       Low
cufflinks 14.062        
cufflinks 11.978        
cufflinks 13.227        

0 Strain