Gene : AT3G43230 A. thaliana TAIR10
Defline:  (1 of 1) PTHR15629//PTHR15629:SF2 - SH3YL1 PROTEIN // SH3 DOMAIN-CONTAINING YSC84-LIKE PROTEIN 1 Genomic Order:  3307
Name:  ? AT3G43230 Secondary Identifier:  ? PAC:19663295
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT3G43230 0.5kb upstream 0.5kb upstream 2959 true Chr3: 15206867-15209825 Arabidopsis thaliana
AT3G43230 0.5kb upstream 0.5kb upstream 500 false Chr3: 15206867-15207366 Arabidopsis thaliana
AT3G43230 0.5kb downstream 0.5kb downstream 2959 true Chr3: 15207367-15210325 Arabidopsis thaliana
AT3G43230 0.5kb downstream 0.5kb downstream 500 false Chr3: 15209826-15210325 Arabidopsis thaliana
AT3G43230 1.0kb upstream 1.0kb upstream 3459 true Chr3: 15206367-15209825 Arabidopsis thaliana
AT3G43230 1.0kb upstream 1.0kb upstream 1000 false Chr3: 15206367-15207366 Arabidopsis thaliana
AT3G43230 1.0kb downstream 1.0kb downstream 3459 true Chr3: 15207367-15210825 Arabidopsis thaliana
AT3G43230 1.0kb downstream 1.0kb downstream 1000 false Chr3: 15209826-15210825 Arabidopsis thaliana
AT3G43230 2.0kb upstream 2.0kb upstream 4459 true Chr3: 15205367-15209825 Arabidopsis thaliana
AT3G43230 2.0kb upstream 2.0kb upstream 2000 false Chr3: 15205367-15207366 Arabidopsis thaliana
AT3G43230 2.0kb downstream 2.0kb downstream 4459 true Chr3: 15207367-15211825 Arabidopsis thaliana
AT3G43230 2.0kb downstream 2.0kb downstream 2000 false Chr3: 15209826-15211825 Arabidopsis thaliana
AT3G43230 5.0kb upstream 5.0kb upstream 7459 true Chr3: 15202367-15209825 Arabidopsis thaliana
AT3G43230 5.0kb upstream 5.0kb upstream 5000 false Chr3: 15202367-15207366 Arabidopsis thaliana
AT3G43230 5.0kb downstream 5.0kb downstream 7459 true Chr3: 15207367-15214825 Arabidopsis thaliana
AT3G43230 5.0kb downstream 5.0kb downstream 5000 false Chr3: 15209826-15214825 Arabidopsis thaliana
AT3G43230 10.0kb upstream 10.0kb upstream 12459 true Chr3: 15197367-15209825 Arabidopsis thaliana
AT3G43230 10.0kb upstream 10.0kb upstream 10000 false Chr3: 15197367-15207366 Arabidopsis thaliana
AT3G43230 10.0kb downstream 10.0kb downstream 12459 true Chr3: 15207367-15219825 Arabidopsis thaliana
AT3G43230 10.0kb downstream 10.0kb downstream 10000 false Chr3: 15209826-15219825 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122361156 5261 Brassicaceae View MSA
123835930 5264 Brassicales-Malvales View MSA
124336872 5266 SBM View MSA
124243314 5268 Malvidae View MSA
124061750 5270 Rosid View MSA
123737814 5271 Pentapetalae View MSA
122792588 5272 Eudicot View MSA
122046278 5273 Angiosperm View MSA
121345874 5274 Embryophyte View MSA
123426176 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 16.412        
cufflinks 12.99       Low
cufflinks 14.27        
cufflinks 15.5        
cufflinks 17.415       High
cufflinks 12.813       Low

0 Strain