Gene : TLP9 A. thaliana TAIR10
Primary Identifier:  ? AT3G06380 Defline:  (1 of 4) PTHR16517//PTHR16517:SF40 - TUBBY-RELATED // TUBBY-LIKE F-BOX PROTEIN 11-RELATED
Genomic Order:  614 Name:  ? AT3G06380
Secondary Identifier:  ? PAC:19664807
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Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT3G06380 0.5kb upstream 0.5kb upstream 2598 true Chr3: 1935624-1938221 Arabidopsis thaliana
AT3G06380 0.5kb upstream 0.5kb upstream 500 false Chr3: 1935624-1936123 Arabidopsis thaliana
AT3G06380 0.5kb downstream 0.5kb downstream 2598 true Chr3: 1936124-1938721 Arabidopsis thaliana
AT3G06380 0.5kb downstream 0.5kb downstream 500 false Chr3: 1938222-1938721 Arabidopsis thaliana
AT3G06380 1.0kb upstream 1.0kb upstream 3098 true Chr3: 1935124-1938221 Arabidopsis thaliana
AT3G06380 1.0kb upstream 1.0kb upstream 1000 false Chr3: 1935124-1936123 Arabidopsis thaliana
AT3G06380 1.0kb downstream 1.0kb downstream 3098 true Chr3: 1936124-1939221 Arabidopsis thaliana
AT3G06380 1.0kb downstream 1.0kb downstream 1000 false Chr3: 1938222-1939221 Arabidopsis thaliana
AT3G06380 2.0kb upstream 2.0kb upstream 4098 true Chr3: 1934124-1938221 Arabidopsis thaliana
AT3G06380 2.0kb upstream 2.0kb upstream 2000 false Chr3: 1934124-1936123 Arabidopsis thaliana
AT3G06380 2.0kb downstream 2.0kb downstream 4098 true Chr3: 1936124-1940221 Arabidopsis thaliana
AT3G06380 2.0kb downstream 2.0kb downstream 2000 false Chr3: 1938222-1940221 Arabidopsis thaliana
AT3G06380 5.0kb upstream 5.0kb upstream 7098 true Chr3: 1931124-1938221 Arabidopsis thaliana
AT3G06380 5.0kb upstream 5.0kb upstream 5000 false Chr3: 1931124-1936123 Arabidopsis thaliana
AT3G06380 5.0kb downstream 5.0kb downstream 7098 true Chr3: 1936124-1943221 Arabidopsis thaliana
AT3G06380 5.0kb downstream 5.0kb downstream 5000 false Chr3: 1938222-1943221 Arabidopsis thaliana
AT3G06380 10.0kb upstream 10.0kb upstream 12098 true Chr3: 1926124-1938221 Arabidopsis thaliana
AT3G06380 10.0kb upstream 10.0kb upstream 10000 false Chr3: 1926124-1936123 Arabidopsis thaliana
AT3G06380 10.0kb downstream 10.0kb downstream 12098 true Chr3: 1936124-1948221 Arabidopsis thaliana
AT3G06380 10.0kb downstream 10.0kb downstream 10000 false Chr3: 1938222-1948221 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121510255 5273 Angiosperm View MSA
122361184 5261 Brassicaceae View MSA
123798112 5264 Brassicales-Malvales View MSA
124295788 5266 SBM View MSA
124148131 5268 Malvidae View MSA
123874190 5270 Rosid View MSA
123458201 5271 Pentapetalae View MSA
122493611 5272 Eudicot View MSA
123429062 5275 Viridiplantae View MSA
120783362 5274 Embryophyte View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 25.52        
cufflinks 20.717        
cufflinks 27.545     High  
cufflinks 23.456        
cufflinks 35.593     High High
cufflinks 15.425       Low

0 Strain