Gene : ALIS1 A. thaliana TAIR10
Primary Identifier:  ? AT3G12740 Defline:  (1 of 2) PTHR10926//PTHR10926:SF30 - CELL CYCLE CONTROL PROTEIN 50 // SUBFAMILY NOT NAMED
Genomic Order:  1256 Name:  ? AT3G12740
Secondary Identifier:  ? PAC:19662155
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Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT3G12740 0.5kb upstream 0.5kb upstream 2761 true Chr3: 4049015-4051775 Arabidopsis thaliana
AT3G12740 0.5kb upstream 0.5kb upstream 500 false Chr3: 4049015-4049514 Arabidopsis thaliana
AT3G12740 0.5kb downstream 0.5kb downstream 2761 true Chr3: 4049515-4052275 Arabidopsis thaliana
AT3G12740 0.5kb downstream 0.5kb downstream 500 false Chr3: 4051776-4052275 Arabidopsis thaliana
AT3G12740 1.0kb upstream 1.0kb upstream 3261 true Chr3: 4048515-4051775 Arabidopsis thaliana
AT3G12740 1.0kb upstream 1.0kb upstream 1000 false Chr3: 4048515-4049514 Arabidopsis thaliana
AT3G12740 1.0kb downstream 1.0kb downstream 3261 true Chr3: 4049515-4052775 Arabidopsis thaliana
AT3G12740 1.0kb downstream 1.0kb downstream 1000 false Chr3: 4051776-4052775 Arabidopsis thaliana
AT3G12740 2.0kb upstream 2.0kb upstream 4261 true Chr3: 4047515-4051775 Arabidopsis thaliana
AT3G12740 2.0kb upstream 2.0kb upstream 2000 false Chr3: 4047515-4049514 Arabidopsis thaliana
AT3G12740 2.0kb downstream 2.0kb downstream 4261 true Chr3: 4049515-4053775 Arabidopsis thaliana
AT3G12740 2.0kb downstream 2.0kb downstream 2000 false Chr3: 4051776-4053775 Arabidopsis thaliana
AT3G12740 5.0kb upstream 5.0kb upstream 7261 true Chr3: 4044515-4051775 Arabidopsis thaliana
AT3G12740 5.0kb upstream 5.0kb upstream 5000 false Chr3: 4044515-4049514 Arabidopsis thaliana
AT3G12740 5.0kb downstream 5.0kb downstream 7261 true Chr3: 4049515-4056775 Arabidopsis thaliana
AT3G12740 5.0kb downstream 5.0kb downstream 5000 false Chr3: 4051776-4056775 Arabidopsis thaliana
AT3G12740 10.0kb upstream 10.0kb upstream 12261 true Chr3: 4039515-4051775 Arabidopsis thaliana
AT3G12740 10.0kb upstream 10.0kb upstream 10000 false Chr3: 4039515-4049514 Arabidopsis thaliana
AT3G12740 10.0kb downstream 10.0kb downstream 12261 true Chr3: 4049515-4061775 Arabidopsis thaliana
AT3G12740 10.0kb downstream 10.0kb downstream 10000 false Chr3: 4051776-4061775 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122379625 5261 Brassicaceae View MSA
123840074 5264 Brassicales-Malvales View MSA
124340383 5266 SBM View MSA
124238626 5268 Malvidae View MSA
124071638 5270 Rosid View MSA
123747358 5271 Pentapetalae View MSA
122796482 5272 Eudicot View MSA
122050302 5273 Angiosperm View MSA
121349346 5274 Embryophyte View MSA
123425782 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 55.297     High High
cufflinks 38.146     High  
cufflinks 33.116     High Low
cufflinks 40.168     High  
cufflinks 47.182     High  
cufflinks 37.33     High  

0 Strain