Gene : AT3G16990 A. thaliana TAIR10
Defline:  (1 of 1) PTHR20858//PTHR20858:SF18 - PHOSPHOMETHYLPYRIMIDINE KINASE // PROTEIN PET18 Genomic Order:  1748
Name:  ? AT3G16990 Secondary Identifier:  ? PAC:19664542
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT3G16990 0.5kb upstream 0.5kb upstream 1517 true Chr3: 5795834-5797350 Arabidopsis thaliana
AT3G16990 0.5kb upstream 0.5kb upstream 500 false Chr3: 5796851-5797350 Arabidopsis thaliana
AT3G16990 0.5kb downstream 0.5kb downstream 1517 true Chr3: 5795334-5796850 Arabidopsis thaliana
AT3G16990 0.5kb downstream 0.5kb downstream 500 false Chr3: 5795334-5795833 Arabidopsis thaliana
AT3G16990 1.0kb upstream 1.0kb upstream 2017 true Chr3: 5795834-5797850 Arabidopsis thaliana
AT3G16990 1.0kb upstream 1.0kb upstream 1000 false Chr3: 5796851-5797850 Arabidopsis thaliana
AT3G16990 1.0kb downstream 1.0kb downstream 2017 true Chr3: 5794834-5796850 Arabidopsis thaliana
AT3G16990 1.0kb downstream 1.0kb downstream 1000 false Chr3: 5794834-5795833 Arabidopsis thaliana
AT3G16990 2.0kb upstream 2.0kb upstream 3017 true Chr3: 5795834-5798850 Arabidopsis thaliana
AT3G16990 2.0kb upstream 2.0kb upstream 2000 false Chr3: 5796851-5798850 Arabidopsis thaliana
AT3G16990 2.0kb downstream 2.0kb downstream 3017 true Chr3: 5793834-5796850 Arabidopsis thaliana
AT3G16990 2.0kb downstream 2.0kb downstream 2000 false Chr3: 5793834-5795833 Arabidopsis thaliana
AT3G16990 5.0kb upstream 5.0kb upstream 6017 true Chr3: 5795834-5801850 Arabidopsis thaliana
AT3G16990 5.0kb upstream 5.0kb upstream 5000 false Chr3: 5796851-5801850 Arabidopsis thaliana
AT3G16990 5.0kb downstream 5.0kb downstream 6017 true Chr3: 5790834-5796850 Arabidopsis thaliana
AT3G16990 5.0kb downstream 5.0kb downstream 5000 false Chr3: 5790834-5795833 Arabidopsis thaliana
AT3G16990 10.0kb upstream 10.0kb upstream 11017 true Chr3: 5795834-5806850 Arabidopsis thaliana
AT3G16990 10.0kb upstream 10.0kb upstream 10000 false Chr3: 5796851-5806850 Arabidopsis thaliana
AT3G16990 10.0kb downstream 10.0kb downstream 11017 true Chr3: 5785834-5796850 Arabidopsis thaliana
AT3G16990 10.0kb downstream 10.0kb downstream 10000 false Chr3: 5785834-5795833 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122370835 5261 Brassicaceae View MSA
123830906 5264 Brassicales-Malvales View MSA
124336502 5266 SBM View MSA
124238992 5268 Malvidae View MSA
124066037 5270 Rosid View MSA
123738905 5271 Pentapetalae View MSA
122790615 5272 Eudicot View MSA
122042801 5273 Angiosperm View MSA
121348004 5274 Embryophyte View MSA
123425587 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 19.698       High
cufflinks 7.299        
cufflinks 10.009        
cufflinks 10.663        
cufflinks 16.968        
cufflinks 6.418       Low

0 Strain