Gene : AT3G53990 A. thaliana TAIR10
Defline:  (1 of 41) PF00582 - Universal stress protein family (Usp) Genomic Order:  4437
Name:  ? AT3G53990 Secondary Identifier:  ? PAC:19659740
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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT3G53990 0.5kb upstream 0.5kb upstream 2298 true Chr3: 19989337-19991634 Arabidopsis thaliana
AT3G53990 0.5kb upstream 0.5kb upstream 500 false Chr3: 19991135-19991634 Arabidopsis thaliana
AT3G53990 0.5kb downstream 0.5kb downstream 2298 true Chr3: 19988837-19991134 Arabidopsis thaliana
AT3G53990 0.5kb downstream 0.5kb downstream 500 false Chr3: 19988837-19989336 Arabidopsis thaliana
AT3G53990 1.0kb upstream 1.0kb upstream 2798 true Chr3: 19989337-19992134 Arabidopsis thaliana
AT3G53990 1.0kb upstream 1.0kb upstream 1000 false Chr3: 19991135-19992134 Arabidopsis thaliana
AT3G53990 1.0kb downstream 1.0kb downstream 2798 true Chr3: 19988337-19991134 Arabidopsis thaliana
AT3G53990 1.0kb downstream 1.0kb downstream 1000 false Chr3: 19988337-19989336 Arabidopsis thaliana
AT3G53990 2.0kb upstream 2.0kb upstream 3798 true Chr3: 19989337-19993134 Arabidopsis thaliana
AT3G53990 2.0kb upstream 2.0kb upstream 2000 false Chr3: 19991135-19993134 Arabidopsis thaliana
AT3G53990 2.0kb downstream 2.0kb downstream 3798 true Chr3: 19987337-19991134 Arabidopsis thaliana
AT3G53990 2.0kb downstream 2.0kb downstream 2000 false Chr3: 19987337-19989336 Arabidopsis thaliana
AT3G53990 5.0kb upstream 5.0kb upstream 6798 true Chr3: 19989337-19996134 Arabidopsis thaliana
AT3G53990 5.0kb upstream 5.0kb upstream 5000 false Chr3: 19991135-19996134 Arabidopsis thaliana
AT3G53990 5.0kb downstream 5.0kb downstream 6798 true Chr3: 19984337-19991134 Arabidopsis thaliana
AT3G53990 5.0kb downstream 5.0kb downstream 5000 false Chr3: 19984337-19989336 Arabidopsis thaliana
AT3G53990 10.0kb upstream 10.0kb upstream 11798 true Chr3: 19989337-20001134 Arabidopsis thaliana
AT3G53990 10.0kb upstream 10.0kb upstream 10000 false Chr3: 19991135-20001134 Arabidopsis thaliana
AT3G53990 10.0kb downstream 10.0kb downstream 11798 true Chr3: 19979337-19991134 Arabidopsis thaliana
AT3G53990 10.0kb downstream 10.0kb downstream 10000 false Chr3: 19979337-19989336 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122380009 5261 Brassicaceae View MSA
123834842 5264 Brassicales-Malvales View MSA
124350362 5266 SBM View MSA
124243263 5268 Malvidae View MSA
124061330 5270 Rosid View MSA
123742988 5271 Pentapetalae View MSA
122795683 5272 Eudicot View MSA
122048128 5273 Angiosperm View MSA
121348607 5274 Embryophyte View MSA
123427901 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 41.235     High Low
cufflinks 73.239     High  
cufflinks 56.164     High  
cufflinks 73.429     High  
cufflinks 66.109     High  
cufflinks 77.94     High  

0 Strain