Gene : AT3G54540 A. thaliana TAIR10
Defline:  (1 of 1) K06184 - ATP-binding cassette, subfamily F, member 1 (ABCF1) Genomic Order:  4492
Name:  ? AT3G54540 Secondary Identifier:  ? PAC:19664059
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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT3G54540 0.5kb upstream 0.5kb upstream 3488 true Chr3: 20189305-20192792 Arabidopsis thaliana
AT3G54540 0.5kb upstream 0.5kb upstream 500 false Chr3: 20189305-20189804 Arabidopsis thaliana
AT3G54540 0.5kb downstream 0.5kb downstream 3488 true Chr3: 20189805-20193292 Arabidopsis thaliana
AT3G54540 0.5kb downstream 0.5kb downstream 500 false Chr3: 20192793-20193292 Arabidopsis thaliana
AT3G54540 1.0kb upstream 1.0kb upstream 3988 true Chr3: 20188805-20192792 Arabidopsis thaliana
AT3G54540 1.0kb upstream 1.0kb upstream 1000 false Chr3: 20188805-20189804 Arabidopsis thaliana
AT3G54540 1.0kb downstream 1.0kb downstream 3988 true Chr3: 20189805-20193792 Arabidopsis thaliana
AT3G54540 1.0kb downstream 1.0kb downstream 1000 false Chr3: 20192793-20193792 Arabidopsis thaliana
AT3G54540 2.0kb upstream 2.0kb upstream 4988 true Chr3: 20187805-20192792 Arabidopsis thaliana
AT3G54540 2.0kb upstream 2.0kb upstream 2000 false Chr3: 20187805-20189804 Arabidopsis thaliana
AT3G54540 2.0kb downstream 2.0kb downstream 4988 true Chr3: 20189805-20194792 Arabidopsis thaliana
AT3G54540 2.0kb downstream 2.0kb downstream 2000 false Chr3: 20192793-20194792 Arabidopsis thaliana
AT3G54540 5.0kb upstream 5.0kb upstream 7988 true Chr3: 20184805-20192792 Arabidopsis thaliana
AT3G54540 5.0kb upstream 5.0kb upstream 5000 false Chr3: 20184805-20189804 Arabidopsis thaliana
AT3G54540 5.0kb downstream 5.0kb downstream 7988 true Chr3: 20189805-20197792 Arabidopsis thaliana
AT3G54540 5.0kb downstream 5.0kb downstream 5000 false Chr3: 20192793-20197792 Arabidopsis thaliana
AT3G54540 10.0kb upstream 10.0kb upstream 12988 true Chr3: 20179805-20192792 Arabidopsis thaliana
AT3G54540 10.0kb upstream 10.0kb upstream 10000 false Chr3: 20179805-20189804 Arabidopsis thaliana
AT3G54540 10.0kb downstream 10.0kb downstream 12988 true Chr3: 20189805-20202792 Arabidopsis thaliana
AT3G54540 10.0kb downstream 10.0kb downstream 10000 false Chr3: 20192793-20202792 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122362840 5261 Brassicaceae View MSA
123838197 5264 Brassicales-Malvales View MSA
124339485 5266 SBM View MSA
124245231 5268 Malvidae View MSA
124065143 5270 Rosid View MSA
123740595 5271 Pentapetalae View MSA
122787677 5272 Eudicot View MSA
122046715 5273 Angiosperm View MSA
121347442 5274 Embryophyte View MSA
123425175 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 28.226        
cufflinks 32.531     High  
cufflinks 24.791       Low
cufflinks 34.732     High High
cufflinks 24.835       Low
cufflinks 32.674     High  

0 Strain