Gene : LHCB2.3 A. thaliana TAIR10
Primary Identifier:  ? AT3G27690 Defline:  (1 of 3) K08913 - light-harvesting complex II chlorophyll a/b binding protein 2 (LHCB2)
Genomic Order:  2930 Name:  ? AT3G27690
Secondary Identifier:  ? PAC:19662645
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0 Pathways

Genomics

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Expression

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3 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT3G27690 0.5kb upstream 0.5kb upstream 1565 true Chr3: 10255447-10257011 Arabidopsis thaliana
AT3G27690 0.5kb upstream 0.5kb upstream 500 false Chr3: 10255447-10255946 Arabidopsis thaliana
AT3G27690 0.5kb downstream 0.5kb downstream 1565 true Chr3: 10255947-10257511 Arabidopsis thaliana
AT3G27690 0.5kb downstream 0.5kb downstream 500 false Chr3: 10257012-10257511 Arabidopsis thaliana
AT3G27690 1.0kb upstream 1.0kb upstream 2065 true Chr3: 10254947-10257011 Arabidopsis thaliana
AT3G27690 1.0kb upstream 1.0kb upstream 1000 false Chr3: 10254947-10255946 Arabidopsis thaliana
AT3G27690 1.0kb downstream 1.0kb downstream 2065 true Chr3: 10255947-10258011 Arabidopsis thaliana
AT3G27690 1.0kb downstream 1.0kb downstream 1000 false Chr3: 10257012-10258011 Arabidopsis thaliana
AT3G27690 2.0kb upstream 2.0kb upstream 3065 true Chr3: 10253947-10257011 Arabidopsis thaliana
AT3G27690 2.0kb upstream 2.0kb upstream 2000 false Chr3: 10253947-10255946 Arabidopsis thaliana
AT3G27690 2.0kb downstream 2.0kb downstream 3065 true Chr3: 10255947-10259011 Arabidopsis thaliana
AT3G27690 2.0kb downstream 2.0kb downstream 2000 false Chr3: 10257012-10259011 Arabidopsis thaliana
AT3G27690 5.0kb upstream 5.0kb upstream 6065 true Chr3: 10250947-10257011 Arabidopsis thaliana
AT3G27690 5.0kb upstream 5.0kb upstream 5000 false Chr3: 10250947-10255946 Arabidopsis thaliana
AT3G27690 5.0kb downstream 5.0kb downstream 6065 true Chr3: 10255947-10262011 Arabidopsis thaliana
AT3G27690 5.0kb downstream 5.0kb downstream 5000 false Chr3: 10257012-10262011 Arabidopsis thaliana
AT3G27690 10.0kb upstream 10.0kb upstream 11065 true Chr3: 10245947-10257011 Arabidopsis thaliana
AT3G27690 10.0kb upstream 10.0kb upstream 10000 false Chr3: 10245947-10255946 Arabidopsis thaliana
AT3G27690 10.0kb downstream 10.0kb downstream 11065 true Chr3: 10255947-10267011 Arabidopsis thaliana
AT3G27690 10.0kb downstream 10.0kb downstream 10000 false Chr3: 10257012-10267011 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122041019 5273 Angiosperm View MSA
122380433 5261 Brassicaceae View MSA
123832323 5264 Brassicales-Malvales View MSA
124343907 5266 SBM View MSA
124251420 5268 Malvidae View MSA
124062505 5270 Rosid View MSA
123749191 5271 Pentapetalae View MSA
122791500 5272 Eudicot View MSA
121349648 5274 Embryophyte View MSA
123426313 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 77.717     High  
cufflinks 9.338        
cufflinks 295.704     High  
cufflinks 3.717        
cufflinks 483.539     High High
cufflinks 3.331       Low

0 Strain