Gene : VPS60.1 A. thaliana TAIR10
Primary Identifier:  ? AT3G10640 Defline:  (1 of 2) K12198 - charged multivesicular body protein 5 (CHMP5, VPS60)
Genomic Order:  1030 Name:  ? AT3G10640
Secondary Identifier:  ? PAC:19660568
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0 Pathways

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT3G10640 0.5kb upstream 0.5kb upstream 2237 true Chr3: 3323310-3325546 Arabidopsis thaliana
AT3G10640 0.5kb upstream 0.5kb upstream 500 false Chr3: 3325047-3325546 Arabidopsis thaliana
AT3G10640 0.5kb downstream 0.5kb downstream 2237 true Chr3: 3322810-3325046 Arabidopsis thaliana
AT3G10640 0.5kb downstream 0.5kb downstream 500 false Chr3: 3322810-3323309 Arabidopsis thaliana
AT3G10640 1.0kb upstream 1.0kb upstream 2737 true Chr3: 3323310-3326046 Arabidopsis thaliana
AT3G10640 1.0kb upstream 1.0kb upstream 1000 false Chr3: 3325047-3326046 Arabidopsis thaliana
AT3G10640 1.0kb downstream 1.0kb downstream 2737 true Chr3: 3322310-3325046 Arabidopsis thaliana
AT3G10640 1.0kb downstream 1.0kb downstream 1000 false Chr3: 3322310-3323309 Arabidopsis thaliana
AT3G10640 2.0kb upstream 2.0kb upstream 3737 true Chr3: 3323310-3327046 Arabidopsis thaliana
AT3G10640 2.0kb upstream 2.0kb upstream 2000 false Chr3: 3325047-3327046 Arabidopsis thaliana
AT3G10640 2.0kb downstream 2.0kb downstream 3737 true Chr3: 3321310-3325046 Arabidopsis thaliana
AT3G10640 2.0kb downstream 2.0kb downstream 2000 false Chr3: 3321310-3323309 Arabidopsis thaliana
AT3G10640 5.0kb upstream 5.0kb upstream 6737 true Chr3: 3323310-3330046 Arabidopsis thaliana
AT3G10640 5.0kb upstream 5.0kb upstream 5000 false Chr3: 3325047-3330046 Arabidopsis thaliana
AT3G10640 5.0kb downstream 5.0kb downstream 6737 true Chr3: 3318310-3325046 Arabidopsis thaliana
AT3G10640 5.0kb downstream 5.0kb downstream 5000 false Chr3: 3318310-3323309 Arabidopsis thaliana
AT3G10640 10.0kb upstream 10.0kb upstream 11737 true Chr3: 3323310-3335046 Arabidopsis thaliana
AT3G10640 10.0kb upstream 10.0kb upstream 10000 false Chr3: 3325047-3335046 Arabidopsis thaliana
AT3G10640 10.0kb downstream 10.0kb downstream 11737 true Chr3: 3313310-3325046 Arabidopsis thaliana
AT3G10640 10.0kb downstream 10.0kb downstream 10000 false Chr3: 3313310-3323309 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122369195 5261 Brassicaceae View MSA
123835161 5264 Brassicales-Malvales View MSA
124338595 5266 SBM View MSA
124245074 5268 Malvidae View MSA
124071822 5270 Rosid View MSA
123742810 5271 Pentapetalae View MSA
122792687 5272 Eudicot View MSA
122046094 5273 Angiosperm View MSA
121350870 5274 Embryophyte View MSA
123426524 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 14.674       High
cufflinks 8.809       Low
cufflinks 9.192        
cufflinks 10.384        
cufflinks 12.189        
cufflinks 10.334        

0 Strain