Gene : AT3G07960 A. thaliana TAIR10
Defline:  (1 of 1) PTHR23086:SF29 - PHOSPHATIDYLINOSITOL 4-PHOSPHATE 5-KINASE 6 Genomic Order:  788
Name:  ? AT3G07960 Secondary Identifier:  ? PAC:19658577
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Athaliana PWY-6351 Arabidopsis thaliana pathologic  
Athaliana PWY-6352 Arabidopsis thaliana pathologic  

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT3G07960 0.5kb upstream 0.5kb upstream 3986 true Chr3: 2534387-2538372 Arabidopsis thaliana
AT3G07960 0.5kb upstream 0.5kb upstream 500 false Chr3: 2534387-2534886 Arabidopsis thaliana
AT3G07960 0.5kb downstream 0.5kb downstream 3986 true Chr3: 2534887-2538872 Arabidopsis thaliana
AT3G07960 0.5kb downstream 0.5kb downstream 500 false Chr3: 2538373-2538872 Arabidopsis thaliana
AT3G07960 1.0kb upstream 1.0kb upstream 4486 true Chr3: 2533887-2538372 Arabidopsis thaliana
AT3G07960 1.0kb upstream 1.0kb upstream 1000 false Chr3: 2533887-2534886 Arabidopsis thaliana
AT3G07960 1.0kb downstream 1.0kb downstream 4486 true Chr3: 2534887-2539372 Arabidopsis thaliana
AT3G07960 1.0kb downstream 1.0kb downstream 1000 false Chr3: 2538373-2539372 Arabidopsis thaliana
AT3G07960 2.0kb upstream 2.0kb upstream 5486 true Chr3: 2532887-2538372 Arabidopsis thaliana
AT3G07960 2.0kb upstream 2.0kb upstream 2000 false Chr3: 2532887-2534886 Arabidopsis thaliana
AT3G07960 2.0kb downstream 2.0kb downstream 5486 true Chr3: 2534887-2540372 Arabidopsis thaliana
AT3G07960 2.0kb downstream 2.0kb downstream 2000 false Chr3: 2538373-2540372 Arabidopsis thaliana
AT3G07960 5.0kb upstream 5.0kb upstream 8486 true Chr3: 2529887-2538372 Arabidopsis thaliana
AT3G07960 5.0kb upstream 5.0kb upstream 5000 false Chr3: 2529887-2534886 Arabidopsis thaliana
AT3G07960 5.0kb downstream 5.0kb downstream 8486 true Chr3: 2534887-2543372 Arabidopsis thaliana
AT3G07960 5.0kb downstream 5.0kb downstream 5000 false Chr3: 2538373-2543372 Arabidopsis thaliana
AT3G07960 10.0kb upstream 10.0kb upstream 13486 true Chr3: 2524887-2538372 Arabidopsis thaliana
AT3G07960 10.0kb upstream 10.0kb upstream 10000 false Chr3: 2524887-2534886 Arabidopsis thaliana
AT3G07960 10.0kb downstream 10.0kb downstream 13486 true Chr3: 2534887-2548372 Arabidopsis thaliana
AT3G07960 10.0kb downstream 10.0kb downstream 10000 false Chr3: 2538373-2548372 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122362710 5261 Brassicaceae View MSA
123835187 5264 Brassicales-Malvales View MSA
124337249 5266 SBM View MSA
124238892 5268 Malvidae View MSA
124073684 5270 Rosid View MSA
123747330 5271 Pentapetalae View MSA
122788169 5272 Eudicot View MSA
122047903 5273 Angiosperm View MSA
121310813 5274 Embryophyte View MSA
123428791 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.597        
cufflinks 3.891        
cufflinks 0.279       Low
cufflinks 3.012        
cufflinks 0.411        
cufflinks 3.566        

0 Strain