Gene : OXS3 A. thaliana TAIR10
Primary Identifier:  ? AT5G56550 Defline:  (1 of 2) PTHR33172:SF2 - EMB|CAB83157.1
Genomic Order:  5129 Name:  ? AT5G56550
Secondary Identifier:  ? PAC:19666103
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0 Pathways

Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT5G56550 0.5kb upstream 0.5kb upstream 1538 true Chr5: 22895616-22897153 Arabidopsis thaliana
AT5G56550 0.5kb upstream 0.5kb upstream 500 false Chr5: 22896654-22897153 Arabidopsis thaliana
AT5G56550 0.5kb downstream 0.5kb downstream 1538 true Chr5: 22895116-22896653 Arabidopsis thaliana
AT5G56550 0.5kb downstream 0.5kb downstream 500 false Chr5: 22895116-22895615 Arabidopsis thaliana
AT5G56550 1.0kb upstream 1.0kb upstream 2038 true Chr5: 22895616-22897653 Arabidopsis thaliana
AT5G56550 1.0kb upstream 1.0kb upstream 1000 false Chr5: 22896654-22897653 Arabidopsis thaliana
AT5G56550 1.0kb downstream 1.0kb downstream 2038 true Chr5: 22894616-22896653 Arabidopsis thaliana
AT5G56550 1.0kb downstream 1.0kb downstream 1000 false Chr5: 22894616-22895615 Arabidopsis thaliana
AT5G56550 2.0kb upstream 2.0kb upstream 3038 true Chr5: 22895616-22898653 Arabidopsis thaliana
AT5G56550 2.0kb upstream 2.0kb upstream 2000 false Chr5: 22896654-22898653 Arabidopsis thaliana
AT5G56550 2.0kb downstream 2.0kb downstream 3038 true Chr5: 22893616-22896653 Arabidopsis thaliana
AT5G56550 2.0kb downstream 2.0kb downstream 2000 false Chr5: 22893616-22895615 Arabidopsis thaliana
AT5G56550 5.0kb upstream 5.0kb upstream 6038 true Chr5: 22895616-22901653 Arabidopsis thaliana
AT5G56550 5.0kb upstream 5.0kb upstream 5000 false Chr5: 22896654-22901653 Arabidopsis thaliana
AT5G56550 5.0kb downstream 5.0kb downstream 6038 true Chr5: 22890616-22896653 Arabidopsis thaliana
AT5G56550 5.0kb downstream 5.0kb downstream 5000 false Chr5: 22890616-22895615 Arabidopsis thaliana
AT5G56550 10.0kb upstream 10.0kb upstream 11038 true Chr5: 22895616-22906653 Arabidopsis thaliana
AT5G56550 10.0kb upstream 10.0kb upstream 10000 false Chr5: 22896654-22906653 Arabidopsis thaliana
AT5G56550 10.0kb downstream 10.0kb downstream 11038 true Chr5: 22885616-22896653 Arabidopsis thaliana
AT5G56550 10.0kb downstream 10.0kb downstream 10000 false Chr5: 22885616-22895615 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122377832 5261 Brassicaceae View MSA
123831223 5264 Brassicales-Malvales View MSA
124345114 5266 SBM View MSA
124245865 5268 Malvidae View MSA
124074077 5270 Rosid View MSA
123750402 5271 Pentapetalae View MSA
122795824 5272 Eudicot View MSA
122046186 5273 Angiosperm View MSA
121310570 5274 Embryophyte View MSA
123348021 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 30.615     High  
cufflinks 7.169        
cufflinks 48.999     High High
cufflinks 7.742        
cufflinks 44.347     High  
cufflinks 3.927       Low

0 Strain