Gene : SYNC1 A. thaliana TAIR10
Primary Identifier:  ? AT5G56680 Defline:  (1 of 1) PF00152//PF00458//PF01336 - tRNA synthetases class II (D, K and N) (tRNA-synt_2) // WHEP-TRS domain (WHEP-TRS) // OB-fold nucleic acid binding domain (tRNA_anti-codon)
Genomic Order:  5142 Name:  ? AT5G56680
Secondary Identifier:  ? PAC:19672341
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Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Athaliana TRNA-CHARGING-PWY Arabidopsis thaliana pathologic  

Genomics

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Expression

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3 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT5G56680 0.5kb upstream 0.5kb upstream 2994 true Chr5: 22936043-22939036 Arabidopsis thaliana
AT5G56680 0.5kb upstream 0.5kb upstream 500 false Chr5: 22936043-22936542 Arabidopsis thaliana
AT5G56680 0.5kb downstream 0.5kb downstream 2994 true Chr5: 22936543-22939536 Arabidopsis thaliana
AT5G56680 0.5kb downstream 0.5kb downstream 500 false Chr5: 22939037-22939536 Arabidopsis thaliana
AT5G56680 1.0kb upstream 1.0kb upstream 3494 true Chr5: 22935543-22939036 Arabidopsis thaliana
AT5G56680 1.0kb upstream 1.0kb upstream 1000 false Chr5: 22935543-22936542 Arabidopsis thaliana
AT5G56680 1.0kb downstream 1.0kb downstream 3494 true Chr5: 22936543-22940036 Arabidopsis thaliana
AT5G56680 1.0kb downstream 1.0kb downstream 1000 false Chr5: 22939037-22940036 Arabidopsis thaliana
AT5G56680 2.0kb upstream 2.0kb upstream 4494 true Chr5: 22934543-22939036 Arabidopsis thaliana
AT5G56680 2.0kb upstream 2.0kb upstream 2000 false Chr5: 22934543-22936542 Arabidopsis thaliana
AT5G56680 2.0kb downstream 2.0kb downstream 4494 true Chr5: 22936543-22941036 Arabidopsis thaliana
AT5G56680 2.0kb downstream 2.0kb downstream 2000 false Chr5: 22939037-22941036 Arabidopsis thaliana
AT5G56680 5.0kb upstream 5.0kb upstream 7494 true Chr5: 22931543-22939036 Arabidopsis thaliana
AT5G56680 5.0kb upstream 5.0kb upstream 5000 false Chr5: 22931543-22936542 Arabidopsis thaliana
AT5G56680 5.0kb downstream 5.0kb downstream 7494 true Chr5: 22936543-22944036 Arabidopsis thaliana
AT5G56680 5.0kb downstream 5.0kb downstream 5000 false Chr5: 22939037-22944036 Arabidopsis thaliana
AT5G56680 10.0kb upstream 10.0kb upstream 12494 true Chr5: 22926543-22939036 Arabidopsis thaliana
AT5G56680 10.0kb upstream 10.0kb upstream 10000 false Chr5: 22926543-22936542 Arabidopsis thaliana
AT5G56680 10.0kb downstream 10.0kb downstream 12494 true Chr5: 22936543-22949036 Arabidopsis thaliana
AT5G56680 10.0kb downstream 10.0kb downstream 10000 false Chr5: 22939037-22949036 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122362988 5261 Brassicaceae View MSA
123829828 5264 Brassicales-Malvales View MSA
124344559 5266 SBM View MSA
124246286 5268 Malvidae View MSA
124074798 5270 Rosid View MSA
123738885 5271 Pentapetalae View MSA
122790023 5272 Eudicot View MSA
122045893 5273 Angiosperm View MSA
121347200 5274 Embryophyte View MSA
123425101 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 32.536     High  
cufflinks 36.744     High  
cufflinks 31.512     High  
cufflinks 42.079     High High
cufflinks 31.603     High  
cufflinks 41.433     High High

0 Strain