Gene : AT5G46560 A. thaliana TAIR10
Defline:  (1 of 1) PTHR13428 - INNER NUCLEAR MEMBRANE PROTEIN MAN1 LEM DOMAIN CONTAINING PROTEIN Genomic Order:  4038
Name:  ? AT5G46560 Secondary Identifier:  ? PAC:19672544
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT5G46560 0.5kb upstream 0.5kb upstream 2902 true Chr5: 18887561-18890462 Arabidopsis thaliana
AT5G46560 0.5kb upstream 0.5kb upstream 500 false Chr5: 18887561-18888060 Arabidopsis thaliana
AT5G46560 0.5kb downstream 0.5kb downstream 2902 true Chr5: 18888061-18890962 Arabidopsis thaliana
AT5G46560 0.5kb downstream 0.5kb downstream 500 false Chr5: 18890463-18890962 Arabidopsis thaliana
AT5G46560 1.0kb upstream 1.0kb upstream 3402 true Chr5: 18887061-18890462 Arabidopsis thaliana
AT5G46560 1.0kb upstream 1.0kb upstream 1000 false Chr5: 18887061-18888060 Arabidopsis thaliana
AT5G46560 1.0kb downstream 1.0kb downstream 3402 true Chr5: 18888061-18891462 Arabidopsis thaliana
AT5G46560 1.0kb downstream 1.0kb downstream 1000 false Chr5: 18890463-18891462 Arabidopsis thaliana
AT5G46560 2.0kb upstream 2.0kb upstream 4402 true Chr5: 18886061-18890462 Arabidopsis thaliana
AT5G46560 2.0kb upstream 2.0kb upstream 2000 false Chr5: 18886061-18888060 Arabidopsis thaliana
AT5G46560 2.0kb downstream 2.0kb downstream 4402 true Chr5: 18888061-18892462 Arabidopsis thaliana
AT5G46560 2.0kb downstream 2.0kb downstream 2000 false Chr5: 18890463-18892462 Arabidopsis thaliana
AT5G46560 5.0kb upstream 5.0kb upstream 7402 true Chr5: 18883061-18890462 Arabidopsis thaliana
AT5G46560 5.0kb upstream 5.0kb upstream 5000 false Chr5: 18883061-18888060 Arabidopsis thaliana
AT5G46560 5.0kb downstream 5.0kb downstream 7402 true Chr5: 18888061-18895462 Arabidopsis thaliana
AT5G46560 5.0kb downstream 5.0kb downstream 5000 false Chr5: 18890463-18895462 Arabidopsis thaliana
AT5G46560 10.0kb upstream 10.0kb upstream 12402 true Chr5: 18878061-18890462 Arabidopsis thaliana
AT5G46560 10.0kb upstream 10.0kb upstream 10000 false Chr5: 18878061-18888060 Arabidopsis thaliana
AT5G46560 10.0kb downstream 10.0kb downstream 12402 true Chr5: 18888061-18900462 Arabidopsis thaliana
AT5G46560 10.0kb downstream 10.0kb downstream 10000 false Chr5: 18890463-18900462 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122364407 5261 Brassicaceae View MSA
123828843 5264 Brassicales-Malvales View MSA
124336691 5266 SBM View MSA
124243390 5268 Malvidae View MSA
124062152 5270 Rosid View MSA
123738040 5271 Pentapetalae View MSA
122785775 5272 Eudicot View MSA
122043959 5273 Angiosperm View MSA
121347546 5274 Embryophyte View MSA
123380568 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 7.02        
cufflinks 8.777        
cufflinks 6.885        
cufflinks 9.169       High
cufflinks 6.049       Low
cufflinks 8.161        

0 Strain