Gene : AT5G41170 A. thaliana TAIR10
Defline:  (1 of 423) PF13041 - PPR repeat family (PPR_2) Genomic Order:  3432
Name:  ? AT5G41170 Secondary Identifier:  ? PAC:19667512
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT5G41170 0.5kb upstream 0.5kb upstream 2599 true Chr5: 16478486-16481084 Arabidopsis thaliana
AT5G41170 0.5kb upstream 0.5kb upstream 500 false Chr5: 16480585-16481084 Arabidopsis thaliana
AT5G41170 0.5kb downstream 0.5kb downstream 2599 true Chr5: 16477986-16480584 Arabidopsis thaliana
AT5G41170 0.5kb downstream 0.5kb downstream 500 false Chr5: 16477986-16478485 Arabidopsis thaliana
AT5G41170 1.0kb upstream 1.0kb upstream 3099 true Chr5: 16478486-16481584 Arabidopsis thaliana
AT5G41170 1.0kb upstream 1.0kb upstream 1000 false Chr5: 16480585-16481584 Arabidopsis thaliana
AT5G41170 1.0kb downstream 1.0kb downstream 3099 true Chr5: 16477486-16480584 Arabidopsis thaliana
AT5G41170 1.0kb downstream 1.0kb downstream 1000 false Chr5: 16477486-16478485 Arabidopsis thaliana
AT5G41170 2.0kb upstream 2.0kb upstream 4099 true Chr5: 16478486-16482584 Arabidopsis thaliana
AT5G41170 2.0kb upstream 2.0kb upstream 2000 false Chr5: 16480585-16482584 Arabidopsis thaliana
AT5G41170 2.0kb downstream 2.0kb downstream 4099 true Chr5: 16476486-16480584 Arabidopsis thaliana
AT5G41170 2.0kb downstream 2.0kb downstream 2000 false Chr5: 16476486-16478485 Arabidopsis thaliana
AT5G41170 5.0kb upstream 5.0kb upstream 7099 true Chr5: 16478486-16485584 Arabidopsis thaliana
AT5G41170 5.0kb upstream 5.0kb upstream 5000 false Chr5: 16480585-16485584 Arabidopsis thaliana
AT5G41170 5.0kb downstream 5.0kb downstream 7099 true Chr5: 16473486-16480584 Arabidopsis thaliana
AT5G41170 5.0kb downstream 5.0kb downstream 5000 false Chr5: 16473486-16478485 Arabidopsis thaliana
AT5G41170 10.0kb upstream 10.0kb upstream 12099 true Chr5: 16478486-16490584 Arabidopsis thaliana
AT5G41170 10.0kb upstream 10.0kb upstream 10000 false Chr5: 16480585-16490584 Arabidopsis thaliana
AT5G41170 10.0kb downstream 10.0kb downstream 12099 true Chr5: 16468486-16480584 Arabidopsis thaliana
AT5G41170 10.0kb downstream 10.0kb downstream 10000 false Chr5: 16468486-16478485 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122373315 5261 Brassicaceae View MSA
123800530 5264 Brassicales-Malvales View MSA
124297937 5266 SBM View MSA
124149704 5268 Malvidae View MSA
123875456 5270 Rosid View MSA
123753756 5271 Pentapetalae View MSA
122797794 5272 Eudicot View MSA
122051419 5273 Angiosperm View MSA
123429046 5275 Viridiplantae View MSA
121351195 5274 Embryophyte View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.851        
cufflinks 1.093        
cufflinks 0.692       Low
cufflinks 1.388       High
cufflinks 0.71       Low
cufflinks 1.26        

0 Strain