Gene : AT5G38890 A. thaliana TAIR10
Defline:  (1 of 1) K07573 - exosome complex component CSL4 (CSL4, EXOSC1) Genomic Order:  3191
Name:  ? AT5G38890 Secondary Identifier:  ? PAC:19668596
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT5G38890 0.5kb upstream 0.5kb upstream 2165 true Chr5: 15568980-15571144 Arabidopsis thaliana
AT5G38890 0.5kb upstream 0.5kb upstream 500 false Chr5: 15568980-15569479 Arabidopsis thaliana
AT5G38890 0.5kb downstream 0.5kb downstream 2165 true Chr5: 15569480-15571644 Arabidopsis thaliana
AT5G38890 0.5kb downstream 0.5kb downstream 500 false Chr5: 15571145-15571644 Arabidopsis thaliana
AT5G38890 1.0kb upstream 1.0kb upstream 2665 true Chr5: 15568480-15571144 Arabidopsis thaliana
AT5G38890 1.0kb upstream 1.0kb upstream 1000 false Chr5: 15568480-15569479 Arabidopsis thaliana
AT5G38890 1.0kb downstream 1.0kb downstream 2665 true Chr5: 15569480-15572144 Arabidopsis thaliana
AT5G38890 1.0kb downstream 1.0kb downstream 1000 false Chr5: 15571145-15572144 Arabidopsis thaliana
AT5G38890 2.0kb upstream 2.0kb upstream 3665 true Chr5: 15567480-15571144 Arabidopsis thaliana
AT5G38890 2.0kb upstream 2.0kb upstream 2000 false Chr5: 15567480-15569479 Arabidopsis thaliana
AT5G38890 2.0kb downstream 2.0kb downstream 3665 true Chr5: 15569480-15573144 Arabidopsis thaliana
AT5G38890 2.0kb downstream 2.0kb downstream 2000 false Chr5: 15571145-15573144 Arabidopsis thaliana
AT5G38890 5.0kb upstream 5.0kb upstream 6665 true Chr5: 15564480-15571144 Arabidopsis thaliana
AT5G38890 5.0kb upstream 5.0kb upstream 5000 false Chr5: 15564480-15569479 Arabidopsis thaliana
AT5G38890 5.0kb downstream 5.0kb downstream 6665 true Chr5: 15569480-15576144 Arabidopsis thaliana
AT5G38890 5.0kb downstream 5.0kb downstream 5000 false Chr5: 15571145-15576144 Arabidopsis thaliana
AT5G38890 10.0kb upstream 10.0kb upstream 11665 true Chr5: 15559480-15571144 Arabidopsis thaliana
AT5G38890 10.0kb upstream 10.0kb upstream 10000 false Chr5: 15559480-15569479 Arabidopsis thaliana
AT5G38890 10.0kb downstream 10.0kb downstream 11665 true Chr5: 15569480-15581144 Arabidopsis thaliana
AT5G38890 10.0kb downstream 10.0kb downstream 10000 false Chr5: 15571145-15581144 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122026382 5273 Angiosperm View MSA
122375207 5261 Brassicaceae View MSA
123833671 5264 Brassicales-Malvales View MSA
124345034 5266 SBM View MSA
124239693 5268 Malvidae View MSA
124065404 5270 Rosid View MSA
123740453 5271 Pentapetalae View MSA
122786772 5272 Eudicot View MSA
121347552 5274 Embryophyte View MSA
123423947 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 5.428        
cufflinks 5.917        
cufflinks 4.475        
cufflinks 6.546        
cufflinks 3.594       Low
cufflinks 7.295       High

0 Strain