Gene : AT5G38344 A. thaliana TAIR10
Defline:  (1 of 112) PF13676 - TIR domain (TIR_2) Genomic Order:  3132
Name:  ? AT5G38344 Secondary Identifier:  ? PAC:19667786
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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT5G38344 0.5kb upstream 0.5kb upstream 1658 true Chr5: 15325331-15326988 Arabidopsis thaliana
AT5G38344 0.5kb upstream 0.5kb upstream 500 false Chr5: 15325331-15325830 Arabidopsis thaliana
AT5G38344 0.5kb downstream 0.5kb downstream 1658 true Chr5: 15325831-15327488 Arabidopsis thaliana
AT5G38344 0.5kb downstream 0.5kb downstream 500 false Chr5: 15326989-15327488 Arabidopsis thaliana
AT5G38344 1.0kb upstream 1.0kb upstream 2158 true Chr5: 15324831-15326988 Arabidopsis thaliana
AT5G38344 1.0kb upstream 1.0kb upstream 1000 false Chr5: 15324831-15325830 Arabidopsis thaliana
AT5G38344 1.0kb downstream 1.0kb downstream 2158 true Chr5: 15325831-15327988 Arabidopsis thaliana
AT5G38344 1.0kb downstream 1.0kb downstream 1000 false Chr5: 15326989-15327988 Arabidopsis thaliana
AT5G38344 2.0kb upstream 2.0kb upstream 3158 true Chr5: 15323831-15326988 Arabidopsis thaliana
AT5G38344 2.0kb upstream 2.0kb upstream 2000 false Chr5: 15323831-15325830 Arabidopsis thaliana
AT5G38344 2.0kb downstream 2.0kb downstream 3158 true Chr5: 15325831-15328988 Arabidopsis thaliana
AT5G38344 2.0kb downstream 2.0kb downstream 2000 false Chr5: 15326989-15328988 Arabidopsis thaliana
AT5G38344 5.0kb upstream 5.0kb upstream 6158 true Chr5: 15320831-15326988 Arabidopsis thaliana
AT5G38344 5.0kb upstream 5.0kb upstream 5000 false Chr5: 15320831-15325830 Arabidopsis thaliana
AT5G38344 5.0kb downstream 5.0kb downstream 6158 true Chr5: 15325831-15331988 Arabidopsis thaliana
AT5G38344 5.0kb downstream 5.0kb downstream 5000 false Chr5: 15326989-15331988 Arabidopsis thaliana
AT5G38344 10.0kb upstream 10.0kb upstream 11158 true Chr5: 15315831-15326988 Arabidopsis thaliana
AT5G38344 10.0kb upstream 10.0kb upstream 10000 false Chr5: 15315831-15325830 Arabidopsis thaliana
AT5G38344 10.0kb downstream 10.0kb downstream 11158 true Chr5: 15325831-15336988 Arabidopsis thaliana
AT5G38344 10.0kb downstream 10.0kb downstream 10000 false Chr5: 15326989-15336988 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122378958 5261 Brassicaceae View MSA
123802050 5264 Brassicales-Malvales View MSA
124299274 5266 SBM View MSA
124254426 5268 Malvidae View MSA
124074947 5270 Rosid View MSA
123753572 5271 Pentapetalae View MSA
122797897 5272 Eudicot View MSA
122051706 5273 Angiosperm View MSA
123429169 5275 Viridiplantae View MSA
121351748 5274 Embryophyte View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.158     Low  
cufflinks 3.149        
cufflinks 0.045     Low Low
cufflinks 4.431        
cufflinks 0.047     Low Low
cufflinks 3.087        

0 Strain