Gene : AT5G26220 A. thaliana TAIR10
Defline:  (1 of 2) PTHR12192//PTHR12192:SF10 - CATION TRANSPORT PROTEIN CHAC-RELATED // SUBFAMILY NOT NAMED Genomic Order:  2510
Name:  ? AT5G26220 Secondary Identifier:  ? PAC:19665433
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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT5G26220 0.5kb upstream 0.5kb upstream 2217 true Chr5: 9162969-9165185 Arabidopsis thaliana
AT5G26220 0.5kb upstream 0.5kb upstream 500 false Chr5: 9164686-9165185 Arabidopsis thaliana
AT5G26220 0.5kb downstream 0.5kb downstream 2217 true Chr5: 9162469-9164685 Arabidopsis thaliana
AT5G26220 0.5kb downstream 0.5kb downstream 500 false Chr5: 9162469-9162968 Arabidopsis thaliana
AT5G26220 1.0kb upstream 1.0kb upstream 2717 true Chr5: 9162969-9165685 Arabidopsis thaliana
AT5G26220 1.0kb upstream 1.0kb upstream 1000 false Chr5: 9164686-9165685 Arabidopsis thaliana
AT5G26220 1.0kb downstream 1.0kb downstream 2717 true Chr5: 9161969-9164685 Arabidopsis thaliana
AT5G26220 1.0kb downstream 1.0kb downstream 1000 false Chr5: 9161969-9162968 Arabidopsis thaliana
AT5G26220 2.0kb upstream 2.0kb upstream 3717 true Chr5: 9162969-9166685 Arabidopsis thaliana
AT5G26220 2.0kb upstream 2.0kb upstream 2000 false Chr5: 9164686-9166685 Arabidopsis thaliana
AT5G26220 2.0kb downstream 2.0kb downstream 3717 true Chr5: 9160969-9164685 Arabidopsis thaliana
AT5G26220 2.0kb downstream 2.0kb downstream 2000 false Chr5: 9160969-9162968 Arabidopsis thaliana
AT5G26220 5.0kb upstream 5.0kb upstream 6717 true Chr5: 9162969-9169685 Arabidopsis thaliana
AT5G26220 5.0kb upstream 5.0kb upstream 5000 false Chr5: 9164686-9169685 Arabidopsis thaliana
AT5G26220 5.0kb downstream 5.0kb downstream 6717 true Chr5: 9157969-9164685 Arabidopsis thaliana
AT5G26220 5.0kb downstream 5.0kb downstream 5000 false Chr5: 9157969-9162968 Arabidopsis thaliana
AT5G26220 10.0kb upstream 10.0kb upstream 11717 true Chr5: 9162969-9174685 Arabidopsis thaliana
AT5G26220 10.0kb upstream 10.0kb upstream 10000 false Chr5: 9164686-9174685 Arabidopsis thaliana
AT5G26220 10.0kb downstream 10.0kb downstream 11717 true Chr5: 9152969-9164685 Arabidopsis thaliana
AT5G26220 10.0kb downstream 10.0kb downstream 10000 false Chr5: 9152969-9162968 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122363393 5261 Brassicaceae View MSA
123798534 5264 Brassicales-Malvales View MSA
124296158 5266 SBM View MSA
124148390 5268 Malvidae View MSA
124064696 5270 Rosid View MSA
123751581 5271 Pentapetalae View MSA
122789241 5272 Eudicot View MSA
122047820 5273 Angiosperm View MSA
121346610 5274 Embryophyte View MSA
123426702 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.745        
cufflinks 2.654        
cufflinks 3.602        
cufflinks 2.365        
cufflinks 1.354       Low
cufflinks 5.475       High

0 Strain