Gene : PGIP2 A. thaliana TAIR10
Primary Identifier:  ? AT5G06870 Defline:  (1 of 3) PTHR27000//PTHR27000:SF136 - FAMILY NOT NAMED // POLYGALACTURONASE INHIBITOR 1-RELATED
Genomic Order:  621 Name:  ? AT5G06870
Secondary Identifier:  ? PAC:19667064
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0 Pathways

Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT5G06870 0.5kb upstream 0.5kb upstream 1749 true Chr5: 2133418-2135166 Arabidopsis thaliana
AT5G06870 0.5kb upstream 0.5kb upstream 500 false Chr5: 2133418-2133917 Arabidopsis thaliana
AT5G06870 0.5kb downstream 0.5kb downstream 1749 true Chr5: 2133918-2135666 Arabidopsis thaliana
AT5G06870 0.5kb downstream 0.5kb downstream 500 false Chr5: 2135167-2135666 Arabidopsis thaliana
AT5G06870 1.0kb upstream 1.0kb upstream 2249 true Chr5: 2132918-2135166 Arabidopsis thaliana
AT5G06870 1.0kb upstream 1.0kb upstream 1000 false Chr5: 2132918-2133917 Arabidopsis thaliana
AT5G06870 1.0kb downstream 1.0kb downstream 2249 true Chr5: 2133918-2136166 Arabidopsis thaliana
AT5G06870 1.0kb downstream 1.0kb downstream 1000 false Chr5: 2135167-2136166 Arabidopsis thaliana
AT5G06870 2.0kb upstream 2.0kb upstream 3249 true Chr5: 2131918-2135166 Arabidopsis thaliana
AT5G06870 2.0kb upstream 2.0kb upstream 2000 false Chr5: 2131918-2133917 Arabidopsis thaliana
AT5G06870 2.0kb downstream 2.0kb downstream 3249 true Chr5: 2133918-2137166 Arabidopsis thaliana
AT5G06870 2.0kb downstream 2.0kb downstream 2000 false Chr5: 2135167-2137166 Arabidopsis thaliana
AT5G06870 5.0kb upstream 5.0kb upstream 6249 true Chr5: 2128918-2135166 Arabidopsis thaliana
AT5G06870 5.0kb upstream 5.0kb upstream 5000 false Chr5: 2128918-2133917 Arabidopsis thaliana
AT5G06870 5.0kb downstream 5.0kb downstream 6249 true Chr5: 2133918-2140166 Arabidopsis thaliana
AT5G06870 5.0kb downstream 5.0kb downstream 5000 false Chr5: 2135167-2140166 Arabidopsis thaliana
AT5G06870 10.0kb upstream 10.0kb upstream 11249 true Chr5: 2123918-2135166 Arabidopsis thaliana
AT5G06870 10.0kb upstream 10.0kb upstream 10000 false Chr5: 2123918-2133917 Arabidopsis thaliana
AT5G06870 10.0kb downstream 10.0kb downstream 11249 true Chr5: 2133918-2145166 Arabidopsis thaliana
AT5G06870 10.0kb downstream 10.0kb downstream 10000 false Chr5: 2135167-2145166 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122380072 5261 Brassicaceae View MSA
123802546 5264 Brassicales-Malvales View MSA
124299734 5266 SBM View MSA
124251810 5268 Malvidae View MSA
124063977 5270 Rosid View MSA
123753765 5271 Pentapetalae View MSA
122797900 5272 Eudicot View MSA
122051692 5273 Angiosperm View MSA
123429169 5275 Viridiplantae View MSA
121351748 5274 Embryophyte View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 35.996     High  
cufflinks 14.739        
cufflinks 178.675     High High
cufflinks 21.963        
cufflinks 183.595     High High
cufflinks 21.543        

0 Strain