Gene : CPK1 A. thaliana TAIR10
Primary Identifier:  ? AT5G04870 Defline:  (1 of 2) PTHR24349//PTHR24349:SF161 - SERINE/THREONINE-PROTEIN KINASE // CALCIUM-DEPENDENT PROTEIN KINASE 1-RELATED
Genomic Order:  410 Name:  ? AT5G04870
Secondary Identifier:  ? PAC:19670991
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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT5G04870 0.5kb upstream 0.5kb upstream 4056 true Chr5: 1416783-1420838 Arabidopsis thaliana
AT5G04870 0.5kb upstream 0.5kb upstream 500 false Chr5: 1420339-1420838 Arabidopsis thaliana
AT5G04870 0.5kb downstream 0.5kb downstream 4056 true Chr5: 1416283-1420338 Arabidopsis thaliana
AT5G04870 0.5kb downstream 0.5kb downstream 500 false Chr5: 1416283-1416782 Arabidopsis thaliana
AT5G04870 1.0kb upstream 1.0kb upstream 4556 true Chr5: 1416783-1421338 Arabidopsis thaliana
AT5G04870 1.0kb upstream 1.0kb upstream 1000 false Chr5: 1420339-1421338 Arabidopsis thaliana
AT5G04870 1.0kb downstream 1.0kb downstream 4556 true Chr5: 1415783-1420338 Arabidopsis thaliana
AT5G04870 1.0kb downstream 1.0kb downstream 1000 false Chr5: 1415783-1416782 Arabidopsis thaliana
AT5G04870 2.0kb upstream 2.0kb upstream 5556 true Chr5: 1416783-1422338 Arabidopsis thaliana
AT5G04870 2.0kb upstream 2.0kb upstream 2000 false Chr5: 1420339-1422338 Arabidopsis thaliana
AT5G04870 2.0kb downstream 2.0kb downstream 5556 true Chr5: 1414783-1420338 Arabidopsis thaliana
AT5G04870 2.0kb downstream 2.0kb downstream 2000 false Chr5: 1414783-1416782 Arabidopsis thaliana
AT5G04870 5.0kb upstream 5.0kb upstream 8556 true Chr5: 1416783-1425338 Arabidopsis thaliana
AT5G04870 5.0kb upstream 5.0kb upstream 5000 false Chr5: 1420339-1425338 Arabidopsis thaliana
AT5G04870 5.0kb downstream 5.0kb downstream 8556 true Chr5: 1411783-1420338 Arabidopsis thaliana
AT5G04870 5.0kb downstream 5.0kb downstream 5000 false Chr5: 1411783-1416782 Arabidopsis thaliana
AT5G04870 10.0kb upstream 10.0kb upstream 13556 true Chr5: 1416783-1430338 Arabidopsis thaliana
AT5G04870 10.0kb upstream 10.0kb upstream 10000 false Chr5: 1420339-1430338 Arabidopsis thaliana
AT5G04870 10.0kb downstream 10.0kb downstream 13556 true Chr5: 1406783-1420338 Arabidopsis thaliana
AT5G04870 10.0kb downstream 10.0kb downstream 10000 false Chr5: 1406783-1416782 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122377435 5261 Brassicaceae View MSA
123837639 5264 Brassicales-Malvales View MSA
124341307 5266 SBM View MSA
124237354 5268 Malvidae View MSA
124072491 5270 Rosid View MSA
123744459 5271 Pentapetalae View MSA
122794301 5272 Eudicot View MSA
122047309 5273 Angiosperm View MSA
121350946 5274 Embryophyte View MSA
123428456 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 26.863        
cufflinks 57.754     High  
cufflinks 18.219       Low
cufflinks 48.615     High  
cufflinks 18.63       Low
cufflinks 66.427     High High

0 Strain