Gene : AT4G39470 A. thaliana TAIR10
Defline:  (1 of 1) PF13371//PF14559 - Tetratricopeptide repeat (TPR_9) // Tetratricopeptide repeat (TPR_19) Genomic Order:  4052
Name:  ? AT4G39470 Secondary Identifier:  ? PAC:19647628
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT4G39470 0.5kb upstream 0.5kb upstream 2298 true Chr4: 18359373-18361670 Arabidopsis thaliana
AT4G39470 0.5kb upstream 0.5kb upstream 500 false Chr4: 18361171-18361670 Arabidopsis thaliana
AT4G39470 0.5kb downstream 0.5kb downstream 2298 true Chr4: 18358873-18361170 Arabidopsis thaliana
AT4G39470 0.5kb downstream 0.5kb downstream 500 false Chr4: 18358873-18359372 Arabidopsis thaliana
AT4G39470 1.0kb upstream 1.0kb upstream 2798 true Chr4: 18359373-18362170 Arabidopsis thaliana
AT4G39470 1.0kb upstream 1.0kb upstream 1000 false Chr4: 18361171-18362170 Arabidopsis thaliana
AT4G39470 1.0kb downstream 1.0kb downstream 2798 true Chr4: 18358373-18361170 Arabidopsis thaliana
AT4G39470 1.0kb downstream 1.0kb downstream 1000 false Chr4: 18358373-18359372 Arabidopsis thaliana
AT4G39470 2.0kb upstream 2.0kb upstream 3798 true Chr4: 18359373-18363170 Arabidopsis thaliana
AT4G39470 2.0kb upstream 2.0kb upstream 2000 false Chr4: 18361171-18363170 Arabidopsis thaliana
AT4G39470 2.0kb downstream 2.0kb downstream 3798 true Chr4: 18357373-18361170 Arabidopsis thaliana
AT4G39470 2.0kb downstream 2.0kb downstream 2000 false Chr4: 18357373-18359372 Arabidopsis thaliana
AT4G39470 5.0kb upstream 5.0kb upstream 6798 true Chr4: 18359373-18366170 Arabidopsis thaliana
AT4G39470 5.0kb upstream 5.0kb upstream 5000 false Chr4: 18361171-18366170 Arabidopsis thaliana
AT4G39470 5.0kb downstream 5.0kb downstream 6798 true Chr4: 18354373-18361170 Arabidopsis thaliana
AT4G39470 5.0kb downstream 5.0kb downstream 5000 false Chr4: 18354373-18359372 Arabidopsis thaliana
AT4G39470 10.0kb upstream 10.0kb upstream 11798 true Chr4: 18359373-18371170 Arabidopsis thaliana
AT4G39470 10.0kb upstream 10.0kb upstream 10000 false Chr4: 18361171-18371170 Arabidopsis thaliana
AT4G39470 10.0kb downstream 10.0kb downstream 11798 true Chr4: 18349373-18361170 Arabidopsis thaliana
AT4G39470 10.0kb downstream 10.0kb downstream 10000 false Chr4: 18349373-18359372 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122365392 5261 Brassicaceae View MSA
123831632 5264 Brassicales-Malvales View MSA
124340670 5266 SBM View MSA
124239953 5268 Malvidae View MSA
124065454 5270 Rosid View MSA
123736679 5271 Pentapetalae View MSA
122790556 5272 Eudicot View MSA
122050724 5273 Angiosperm View MSA
121348352 5274 Embryophyte View MSA
123426406 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 7.73       High
cufflinks 5.938        
cufflinks 6.879        
cufflinks 6.482        
cufflinks 6.535        
cufflinks 5.567       Low

0 Strain