Gene : SYP23 A. thaliana TAIR10
Primary Identifier:  ? AT4G17730 Defline:  (1 of 1) PF00804//PF14523 - Syntaxin (Syntaxin) // Syntaxin-like protein (Syntaxin_2)
Genomic Order:  1702 Name:  ? AT4G17730
Secondary Identifier:  ? PAC:19646547
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0 Pathways

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT4G17730 0.5kb upstream 0.5kb upstream 2420 true Chr4: 9864603-9867022 Arabidopsis thaliana
AT4G17730 0.5kb upstream 0.5kb upstream 500 false Chr4: 9864603-9865102 Arabidopsis thaliana
AT4G17730 0.5kb downstream 0.5kb downstream 2420 true Chr4: 9865103-9867522 Arabidopsis thaliana
AT4G17730 0.5kb downstream 0.5kb downstream 500 false Chr4: 9867023-9867522 Arabidopsis thaliana
AT4G17730 1.0kb upstream 1.0kb upstream 2920 true Chr4: 9864103-9867022 Arabidopsis thaliana
AT4G17730 1.0kb upstream 1.0kb upstream 1000 false Chr4: 9864103-9865102 Arabidopsis thaliana
AT4G17730 1.0kb downstream 1.0kb downstream 2920 true Chr4: 9865103-9868022 Arabidopsis thaliana
AT4G17730 1.0kb downstream 1.0kb downstream 1000 false Chr4: 9867023-9868022 Arabidopsis thaliana
AT4G17730 2.0kb upstream 2.0kb upstream 3920 true Chr4: 9863103-9867022 Arabidopsis thaliana
AT4G17730 2.0kb upstream 2.0kb upstream 2000 false Chr4: 9863103-9865102 Arabidopsis thaliana
AT4G17730 2.0kb downstream 2.0kb downstream 3920 true Chr4: 9865103-9869022 Arabidopsis thaliana
AT4G17730 2.0kb downstream 2.0kb downstream 2000 false Chr4: 9867023-9869022 Arabidopsis thaliana
AT4G17730 5.0kb upstream 5.0kb upstream 6920 true Chr4: 9860103-9867022 Arabidopsis thaliana
AT4G17730 5.0kb upstream 5.0kb upstream 5000 false Chr4: 9860103-9865102 Arabidopsis thaliana
AT4G17730 5.0kb downstream 5.0kb downstream 6920 true Chr4: 9865103-9872022 Arabidopsis thaliana
AT4G17730 5.0kb downstream 5.0kb downstream 5000 false Chr4: 9867023-9872022 Arabidopsis thaliana
AT4G17730 10.0kb upstream 10.0kb upstream 11920 true Chr4: 9855103-9867022 Arabidopsis thaliana
AT4G17730 10.0kb upstream 10.0kb upstream 10000 false Chr4: 9855103-9865102 Arabidopsis thaliana
AT4G17730 10.0kb downstream 10.0kb downstream 11920 true Chr4: 9865103-9877022 Arabidopsis thaliana
AT4G17730 10.0kb downstream 10.0kb downstream 10000 false Chr4: 9867023-9877022 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122364396 5261 Brassicaceae View MSA
123840740 5264 Brassicales-Malvales View MSA
124348531 5266 SBM View MSA
124247057 5268 Malvidae View MSA
124063006 5270 Rosid View MSA
123751238 5271 Pentapetalae View MSA
122794046 5272 Eudicot View MSA
122050174 5273 Angiosperm View MSA
121345872 5274 Embryophyte View MSA
123428495 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 15.531       Low
cufflinks 45.523     High High
cufflinks 17.897        
cufflinks 35.661     High  
cufflinks 16.758        
cufflinks 27.611        

0 Strain