Gene : EOL1 A. thaliana TAIR10
Primary Identifier:  ? AT4G02680 Defline:  (1 of 1) PTHR23083//PTHR23083:SF430 - TETRATRICOPEPTIDE REPEAT PROTEIN, TPR // SUBFAMILY NOT NAMED
Genomic Order:  313 Name:  ? AT4G02680
Secondary Identifier:  ? PAC:19648790
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0 Pathways

Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT4G02680 0.5kb upstream 0.5kb upstream 4382 true Chr4: 1181049-1185430 Arabidopsis thaliana
AT4G02680 0.5kb upstream 0.5kb upstream 500 false Chr4: 1184931-1185430 Arabidopsis thaliana
AT4G02680 0.5kb downstream 0.5kb downstream 4382 true Chr4: 1180549-1184930 Arabidopsis thaliana
AT4G02680 0.5kb downstream 0.5kb downstream 500 false Chr4: 1180549-1181048 Arabidopsis thaliana
AT4G02680 1.0kb upstream 1.0kb upstream 4882 true Chr4: 1181049-1185930 Arabidopsis thaliana
AT4G02680 1.0kb upstream 1.0kb upstream 1000 false Chr4: 1184931-1185930 Arabidopsis thaliana
AT4G02680 1.0kb downstream 1.0kb downstream 4882 true Chr4: 1180049-1184930 Arabidopsis thaliana
AT4G02680 1.0kb downstream 1.0kb downstream 1000 false Chr4: 1180049-1181048 Arabidopsis thaliana
AT4G02680 2.0kb upstream 2.0kb upstream 5882 true Chr4: 1181049-1186930 Arabidopsis thaliana
AT4G02680 2.0kb upstream 2.0kb upstream 2000 false Chr4: 1184931-1186930 Arabidopsis thaliana
AT4G02680 2.0kb downstream 2.0kb downstream 5882 true Chr4: 1179049-1184930 Arabidopsis thaliana
AT4G02680 2.0kb downstream 2.0kb downstream 2000 false Chr4: 1179049-1181048 Arabidopsis thaliana
AT4G02680 5.0kb upstream 5.0kb upstream 8882 true Chr4: 1181049-1189930 Arabidopsis thaliana
AT4G02680 5.0kb upstream 5.0kb upstream 5000 false Chr4: 1184931-1189930 Arabidopsis thaliana
AT4G02680 5.0kb downstream 5.0kb downstream 8882 true Chr4: 1176049-1184930 Arabidopsis thaliana
AT4G02680 5.0kb downstream 5.0kb downstream 5000 false Chr4: 1176049-1181048 Arabidopsis thaliana
AT4G02680 10.0kb upstream 10.0kb upstream 13882 true Chr4: 1181049-1194930 Arabidopsis thaliana
AT4G02680 10.0kb upstream 10.0kb upstream 10000 false Chr4: 1184931-1194930 Arabidopsis thaliana
AT4G02680 10.0kb downstream 10.0kb downstream 13882 true Chr4: 1171049-1184930 Arabidopsis thaliana
AT4G02680 10.0kb downstream 10.0kb downstream 10000 false Chr4: 1171049-1181048 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122368456 5261 Brassicaceae View MSA
123832493 5264 Brassicales-Malvales View MSA
124345479 5266 SBM View MSA
124253364 5268 Malvidae View MSA
124067211 5270 Rosid View MSA
123736449 5271 Pentapetalae View MSA
122791589 5272 Eudicot View MSA
122042735 5273 Angiosperm View MSA
121349439 5274 Embryophyte View MSA
123381312 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 16.597        
cufflinks 42.464     High High
cufflinks 16.823        
cufflinks 36.994     High  
cufflinks 13.947       Low
cufflinks 41.609     High  

0 Strain