Gene : ROC4 A. thaliana TAIR10
Primary Identifier:  ? AT3G62030 Defline:  (1 of 1) PTHR11071//PTHR11071:SF247 - PEPTIDYL-PROLYL CIS-TRANS ISOMERASE // PEPTIDYL-PROLYL CIS-TRANS ISOMERASE D
Genomic Order:  5280 Name:  ? AT3G62030
Secondary Identifier:  ? PAC:19663418
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0 Pathways

Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT3G62030 0.5kb upstream 0.5kb upstream 2875 true Chr3: 22972504-22975378 Arabidopsis thaliana
AT3G62030 0.5kb upstream 0.5kb upstream 500 false Chr3: 22972504-22973003 Arabidopsis thaliana
AT3G62030 0.5kb downstream 0.5kb downstream 2875 true Chr3: 22973004-22975878 Arabidopsis thaliana
AT3G62030 0.5kb downstream 0.5kb downstream 500 false Chr3: 22975379-22975878 Arabidopsis thaliana
AT3G62030 1.0kb upstream 1.0kb upstream 3375 true Chr3: 22972004-22975378 Arabidopsis thaliana
AT3G62030 1.0kb upstream 1.0kb upstream 1000 false Chr3: 22972004-22973003 Arabidopsis thaliana
AT3G62030 1.0kb downstream 1.0kb downstream 3375 true Chr3: 22973004-22976378 Arabidopsis thaliana
AT3G62030 1.0kb downstream 1.0kb downstream 1000 false Chr3: 22975379-22976378 Arabidopsis thaliana
AT3G62030 2.0kb upstream 2.0kb upstream 4375 true Chr3: 22971004-22975378 Arabidopsis thaliana
AT3G62030 2.0kb upstream 2.0kb upstream 2000 false Chr3: 22971004-22973003 Arabidopsis thaliana
AT3G62030 2.0kb downstream 2.0kb downstream 4375 true Chr3: 22973004-22977378 Arabidopsis thaliana
AT3G62030 2.0kb downstream 2.0kb downstream 2000 false Chr3: 22975379-22977378 Arabidopsis thaliana
AT3G62030 5.0kb upstream 5.0kb upstream 7375 true Chr3: 22968004-22975378 Arabidopsis thaliana
AT3G62030 5.0kb upstream 5.0kb upstream 5000 false Chr3: 22968004-22973003 Arabidopsis thaliana
AT3G62030 5.0kb downstream 5.0kb downstream 7375 true Chr3: 22973004-22980378 Arabidopsis thaliana
AT3G62030 5.0kb downstream 5.0kb downstream 5000 false Chr3: 22975379-22980378 Arabidopsis thaliana
AT3G62030 10.0kb upstream 10.0kb upstream 12375 true Chr3: 22963004-22975378 Arabidopsis thaliana
AT3G62030 10.0kb upstream 10.0kb upstream 10000 false Chr3: 22963004-22973003 Arabidopsis thaliana
AT3G62030 10.0kb downstream 10.0kb downstream 12375 true Chr3: 22973004-22985378 Arabidopsis thaliana
AT3G62030 10.0kb downstream 10.0kb downstream 10000 false Chr3: 22975379-22985378 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122330166 5261 Brassicaceae Singleton cluster - no MSA
123836667 5264 Brassicales-Malvales View MSA
124345187 5266 SBM View MSA
124243935 5268 Malvidae View MSA
124069155 5270 Rosid View MSA
123741646 5271 Pentapetalae View MSA
122794502 5272 Eudicot View MSA
122048638 5273 Angiosperm View MSA
123428973 5275 Viridiplantae View MSA
121349242 5274 Embryophyte View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 114.098     High  
cufflinks 5.278        
cufflinks 142.854     High High
cufflinks 4.606        
cufflinks 98.998     High  
cufflinks 6.09        

0 Strain