Gene : Seita.9G113100 S. italica v2.2
Defline:  (1 of 1) PTHR23346:SF7 - TRANSLATIONAL ACTIVATOR GCN1 Genomic Order:  1131
Name:  ? Seita.9G113100 Secondary Identifier:  ? PAC:32693452
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.9G113100 0.5kb upstream 0.5kb upstream 21835 true scaffold_9: 6965115-6986949 Setaria italica
Seita.9G113100 0.5kb upstream 0.5kb upstream 500 false scaffold_9: 6986450-6986949 Setaria italica
Seita.9G113100 0.5kb downstream 0.5kb downstream 21835 true scaffold_9: 6964615-6986449 Setaria italica
Seita.9G113100 0.5kb downstream 0.5kb downstream 500 false scaffold_9: 6964615-6965114 Setaria italica
Seita.9G113100 1.0kb upstream 1.0kb upstream 22335 true scaffold_9: 6965115-6987449 Setaria italica
Seita.9G113100 1.0kb upstream 1.0kb upstream 1000 false scaffold_9: 6986450-6987449 Setaria italica
Seita.9G113100 1.0kb downstream 1.0kb downstream 22335 true scaffold_9: 6964115-6986449 Setaria italica
Seita.9G113100 1.0kb downstream 1.0kb downstream 1000 false scaffold_9: 6964115-6965114 Setaria italica
Seita.9G113100 2.0kb upstream 2.0kb upstream 23335 true scaffold_9: 6965115-6988449 Setaria italica
Seita.9G113100 2.0kb upstream 2.0kb upstream 2000 false scaffold_9: 6986450-6988449 Setaria italica
Seita.9G113100 2.0kb downstream 2.0kb downstream 23335 true scaffold_9: 6963115-6986449 Setaria italica
Seita.9G113100 2.0kb downstream 2.0kb downstream 2000 false scaffold_9: 6963115-6965114 Setaria italica
Seita.9G113100 5.0kb upstream 5.0kb upstream 26335 true scaffold_9: 6965115-6991449 Setaria italica
Seita.9G113100 5.0kb upstream 5.0kb upstream 5000 false scaffold_9: 6986450-6991449 Setaria italica
Seita.9G113100 5.0kb downstream 5.0kb downstream 26335 true scaffold_9: 6960115-6986449 Setaria italica
Seita.9G113100 5.0kb downstream 5.0kb downstream 5000 false scaffold_9: 6960115-6965114 Setaria italica
Seita.9G113100 10.0kb upstream 10.0kb upstream 31335 true scaffold_9: 6965115-6996449 Setaria italica
Seita.9G113100 10.0kb upstream 10.0kb upstream 10000 false scaffold_9: 6986450-6996449 Setaria italica
Seita.9G113100 10.0kb downstream 10.0kb downstream 31335 true scaffold_9: 6955115-6986449 Setaria italica
Seita.9G113100 10.0kb downstream 10.0kb downstream 10000 false scaffold_9: 6955115-6965114 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122177267 5267 Panicoideae View MSA
124581082 5269 Grass View MSA
122050896 5273 Angiosperm View MSA
121346458 5274 Embryophyte View MSA
123425740 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 20.35     High High
cufflinks 14.866     High  
cufflinks 13.922     High  
cufflinks 7.904       Low
cufflinks 8.272       Low
cufflinks 14.037     High  
cufflinks 12.642        
cufflinks 8.701       Low
cufflinks 17.973     High High
cufflinks 9.479        
cufflinks 16.986     High High
cufflinks 9.634        
cufflinks 11.283        
cufflinks 17.28     High High
cufflinks 13.781        
cufflinks 14.42     High  
cufflinks 9.058        
cufflinks 19.36     High High
cufflinks 7.217       Low
cufflinks 11.581        

0 Strain