Gene : Seita.9G108300 S. italica v2.2
Defline:  (1 of 1) PTHR24031:SF333 - DEAD-BOX ATP-DEPENDENT RNA HELICASE 16 Genomic Order:  1083
Name:  ? Seita.9G108300 Secondary Identifier:  ? PAC:32689735
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.9G108300 0.5kb upstream 0.5kb upstream 9460 true scaffold_9: 6570203-6579662 Setaria italica
Seita.9G108300 0.5kb upstream 0.5kb upstream 500 false scaffold_9: 6579163-6579662 Setaria italica
Seita.9G108300 0.5kb downstream 0.5kb downstream 9460 true scaffold_9: 6569703-6579162 Setaria italica
Seita.9G108300 0.5kb downstream 0.5kb downstream 500 false scaffold_9: 6569703-6570202 Setaria italica
Seita.9G108300 1.0kb upstream 1.0kb upstream 9960 true scaffold_9: 6570203-6580162 Setaria italica
Seita.9G108300 1.0kb upstream 1.0kb upstream 1000 false scaffold_9: 6579163-6580162 Setaria italica
Seita.9G108300 1.0kb downstream 1.0kb downstream 9960 true scaffold_9: 6569203-6579162 Setaria italica
Seita.9G108300 1.0kb downstream 1.0kb downstream 1000 false scaffold_9: 6569203-6570202 Setaria italica
Seita.9G108300 2.0kb upstream 2.0kb upstream 10960 true scaffold_9: 6570203-6581162 Setaria italica
Seita.9G108300 2.0kb upstream 2.0kb upstream 2000 false scaffold_9: 6579163-6581162 Setaria italica
Seita.9G108300 2.0kb downstream 2.0kb downstream 10960 true scaffold_9: 6568203-6579162 Setaria italica
Seita.9G108300 2.0kb downstream 2.0kb downstream 2000 false scaffold_9: 6568203-6570202 Setaria italica
Seita.9G108300 5.0kb upstream 5.0kb upstream 13960 true scaffold_9: 6570203-6584162 Setaria italica
Seita.9G108300 5.0kb upstream 5.0kb upstream 5000 false scaffold_9: 6579163-6584162 Setaria italica
Seita.9G108300 5.0kb downstream 5.0kb downstream 13960 true scaffold_9: 6565203-6579162 Setaria italica
Seita.9G108300 5.0kb downstream 5.0kb downstream 5000 false scaffold_9: 6565203-6570202 Setaria italica
Seita.9G108300 10.0kb upstream 10.0kb upstream 18960 true scaffold_9: 6570203-6589162 Setaria italica
Seita.9G108300 10.0kb upstream 10.0kb upstream 10000 false scaffold_9: 6579163-6589162 Setaria italica
Seita.9G108300 10.0kb downstream 10.0kb downstream 18960 true scaffold_9: 6560203-6579162 Setaria italica
Seita.9G108300 10.0kb downstream 10.0kb downstream 10000 false scaffold_9: 6560203-6570202 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122041039 5273 Angiosperm View MSA
122200041 5267 Panicoideae View MSA
124569814 5269 Grass View MSA
121343805 5274 Embryophyte View MSA
123424907 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.967        
cufflinks 3.597       High
cufflinks 2.191        
cufflinks 1.398       Low
cufflinks 1.625       Low
cufflinks 3.977       High
cufflinks 2.462        
cufflinks 2.541        
cufflinks 3.126        
cufflinks 3.0        
cufflinks 2.863        
cufflinks 2.976        
cufflinks 2.07        
cufflinks 2.968        
cufflinks 3.639       High
cufflinks 2.433        
cufflinks 3.402        
cufflinks 3.165        
cufflinks 1.498       Low
cufflinks 3.348        

0 Strain