Gene : Seita.8G168000 S. italica v2.2
Defline:  (1 of 62) PF01535//PF13041//PF13812 - PPR repeat (PPR) // PPR repeat family (PPR_2) // Pentatricopeptide repeat domain (PPR_3) Genomic Order:  1680
Name:  ? Seita.8G168000 Secondary Identifier:  ? PAC:32714880
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.8G168000 0.5kb upstream 0.5kb upstream 1706 true scaffold_8: 31099854-31101559 Setaria italica
Seita.8G168000 0.5kb upstream 0.5kb upstream 500 false scaffold_8: 31101060-31101559 Setaria italica
Seita.8G168000 0.5kb downstream 0.5kb downstream 1706 true scaffold_8: 31099354-31101059 Setaria italica
Seita.8G168000 0.5kb downstream 0.5kb downstream 500 false scaffold_8: 31099354-31099853 Setaria italica
Seita.8G168000 1.0kb upstream 1.0kb upstream 2206 true scaffold_8: 31099854-31102059 Setaria italica
Seita.8G168000 1.0kb upstream 1.0kb upstream 1000 false scaffold_8: 31101060-31102059 Setaria italica
Seita.8G168000 1.0kb downstream 1.0kb downstream 2206 true scaffold_8: 31098854-31101059 Setaria italica
Seita.8G168000 1.0kb downstream 1.0kb downstream 1000 false scaffold_8: 31098854-31099853 Setaria italica
Seita.8G168000 2.0kb upstream 2.0kb upstream 3206 true scaffold_8: 31099854-31103059 Setaria italica
Seita.8G168000 2.0kb upstream 2.0kb upstream 2000 false scaffold_8: 31101060-31103059 Setaria italica
Seita.8G168000 2.0kb downstream 2.0kb downstream 3206 true scaffold_8: 31097854-31101059 Setaria italica
Seita.8G168000 2.0kb downstream 2.0kb downstream 2000 false scaffold_8: 31097854-31099853 Setaria italica
Seita.8G168000 5.0kb upstream 5.0kb upstream 6206 true scaffold_8: 31099854-31106059 Setaria italica
Seita.8G168000 5.0kb upstream 5.0kb upstream 5000 false scaffold_8: 31101060-31106059 Setaria italica
Seita.8G168000 5.0kb downstream 5.0kb downstream 6206 true scaffold_8: 31094854-31101059 Setaria italica
Seita.8G168000 5.0kb downstream 5.0kb downstream 5000 false scaffold_8: 31094854-31099853 Setaria italica
Seita.8G168000 10.0kb upstream 10.0kb upstream 11206 true scaffold_8: 31099854-31111059 Setaria italica
Seita.8G168000 10.0kb upstream 10.0kb upstream 10000 false scaffold_8: 31101060-31111059 Setaria italica
Seita.8G168000 10.0kb downstream 10.0kb downstream 11206 true scaffold_8: 31089854-31101059 Setaria italica
Seita.8G168000 10.0kb downstream 10.0kb downstream 10000 false scaffold_8: 31089854-31099853 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122199286 5267 Panicoideae View MSA
124581177 5269 Grass View MSA
122051419 5273 Angiosperm View MSA
123429046 5275 Viridiplantae View MSA
121351195 5274 Embryophyte View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.061     Low  
cufflinks 0.08     Low  
cufflinks 0.064     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.01     Low Low
cufflinks 0.035     Low  
cufflinks 0.031     Low  
cufflinks 0.34       High
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.009     Low Low
cufflinks 0.048     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.063     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed

0 Strain