Gene : Seita.7G277300 S. italica v2.2
Defline:  (1 of 1) 2.7.4.7 - Phosphomethylpyrimidine kinase / Hydroxymethylpyrimidine phosphokinase Genomic Order:  2773
Name:  ? Seita.7G277300 Secondary Identifier:  ? PAC:32703130
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Sequence Feature Displayer

Ontology Annotation Displayer

3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sitalica PWY-6890 Setaria italica pathologic  
Sitalica PWY-6908 Setaria italica pathologic  
Sitalica PWY-6910 Setaria italica pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.7G277300 0.5kb upstream 0.5kb upstream 4705 true scaffold_7: 32684558-32689262 Setaria italica
Seita.7G277300 0.5kb upstream 0.5kb upstream 500 false scaffold_7: 32684558-32685057 Setaria italica
Seita.7G277300 0.5kb downstream 0.5kb downstream 4705 true scaffold_7: 32685058-32689762 Setaria italica
Seita.7G277300 0.5kb downstream 0.5kb downstream 500 false scaffold_7: 32689263-32689762 Setaria italica
Seita.7G277300 1.0kb upstream 1.0kb upstream 5205 true scaffold_7: 32684058-32689262 Setaria italica
Seita.7G277300 1.0kb upstream 1.0kb upstream 1000 false scaffold_7: 32684058-32685057 Setaria italica
Seita.7G277300 1.0kb downstream 1.0kb downstream 5205 true scaffold_7: 32685058-32690262 Setaria italica
Seita.7G277300 1.0kb downstream 1.0kb downstream 1000 false scaffold_7: 32689263-32690262 Setaria italica
Seita.7G277300 2.0kb upstream 2.0kb upstream 6205 true scaffold_7: 32683058-32689262 Setaria italica
Seita.7G277300 2.0kb upstream 2.0kb upstream 2000 false scaffold_7: 32683058-32685057 Setaria italica
Seita.7G277300 2.0kb downstream 2.0kb downstream 6205 true scaffold_7: 32685058-32691262 Setaria italica
Seita.7G277300 2.0kb downstream 2.0kb downstream 2000 false scaffold_7: 32689263-32691262 Setaria italica
Seita.7G277300 5.0kb upstream 5.0kb upstream 9205 true scaffold_7: 32680058-32689262 Setaria italica
Seita.7G277300 5.0kb upstream 5.0kb upstream 5000 false scaffold_7: 32680058-32685057 Setaria italica
Seita.7G277300 5.0kb downstream 5.0kb downstream 9205 true scaffold_7: 32685058-32694262 Setaria italica
Seita.7G277300 5.0kb downstream 5.0kb downstream 5000 false scaffold_7: 32689263-32694262 Setaria italica
Seita.7G277300 10.0kb upstream 10.0kb upstream 14205 true scaffold_7: 32675058-32689262 Setaria italica
Seita.7G277300 10.0kb upstream 10.0kb upstream 10000 false scaffold_7: 32675058-32685057 Setaria italica
Seita.7G277300 10.0kb downstream 10.0kb downstream 14205 true scaffold_7: 32685058-32699262 Setaria italica
Seita.7G277300 10.0kb downstream 10.0kb downstream 10000 false scaffold_7: 32689263-32699262 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122195158 5267 Panicoideae View MSA
124575000 5269 Grass View MSA
122045389 5273 Angiosperm View MSA
121344045 5274 Embryophyte View MSA
123424693 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 5.164        
cufflinks 3.107       Low
cufflinks 11.149     High High
cufflinks 11.697     High High
cufflinks 10.034       High
cufflinks 3.27       Low
cufflinks 5.478        
cufflinks 6.22        
cufflinks 9.339       High
cufflinks 6.764        
cufflinks 5.851        
cufflinks 6.527        
cufflinks 6.968        
cufflinks 6.088        
cufflinks 7.012        
cufflinks 4.461        
cufflinks 7.394        
cufflinks 3.786       Low
cufflinks 6.729        
cufflinks 5.746        

0 Strain