Gene : Seita.6G150800 S. italica v2.2
Defline:  (1 of 1) PTHR32098:SF5 - LYCOPENE BETA/EPSILON CYCLASE PROTEIN Genomic Order:  1508
Name:  ? Seita.6G150800 Secondary Identifier:  ? PAC:32700964
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Sequence Feature Displayer

Ontology Annotation Displayer

3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sitalica CAROTENOID-PWY Setaria italica pathologic  
Sitalica PWY-5943 Setaria italica pathologic  
Sitalica PWY-5947 Setaria italica pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.6G150800 0.5kb upstream 0.5kb upstream 8777 true scaffold_6: 26964326-26973102 Setaria italica
Seita.6G150800 0.5kb upstream 0.5kb upstream 500 false scaffold_6: 26964326-26964825 Setaria italica
Seita.6G150800 0.5kb downstream 0.5kb downstream 8777 true scaffold_6: 26964826-26973602 Setaria italica
Seita.6G150800 0.5kb downstream 0.5kb downstream 500 false scaffold_6: 26973103-26973602 Setaria italica
Seita.6G150800 1.0kb upstream 1.0kb upstream 9277 true scaffold_6: 26963826-26973102 Setaria italica
Seita.6G150800 1.0kb upstream 1.0kb upstream 1000 false scaffold_6: 26963826-26964825 Setaria italica
Seita.6G150800 1.0kb downstream 1.0kb downstream 9277 true scaffold_6: 26964826-26974102 Setaria italica
Seita.6G150800 1.0kb downstream 1.0kb downstream 1000 false scaffold_6: 26973103-26974102 Setaria italica
Seita.6G150800 2.0kb upstream 2.0kb upstream 10277 true scaffold_6: 26962826-26973102 Setaria italica
Seita.6G150800 2.0kb upstream 2.0kb upstream 2000 false scaffold_6: 26962826-26964825 Setaria italica
Seita.6G150800 2.0kb downstream 2.0kb downstream 10277 true scaffold_6: 26964826-26975102 Setaria italica
Seita.6G150800 2.0kb downstream 2.0kb downstream 2000 false scaffold_6: 26973103-26975102 Setaria italica
Seita.6G150800 5.0kb upstream 5.0kb upstream 13277 true scaffold_6: 26959826-26973102 Setaria italica
Seita.6G150800 5.0kb upstream 5.0kb upstream 5000 false scaffold_6: 26959826-26964825 Setaria italica
Seita.6G150800 5.0kb downstream 5.0kb downstream 13277 true scaffold_6: 26964826-26978102 Setaria italica
Seita.6G150800 5.0kb downstream 5.0kb downstream 5000 false scaffold_6: 26973103-26978102 Setaria italica
Seita.6G150800 10.0kb upstream 10.0kb upstream 18277 true scaffold_6: 26954826-26973102 Setaria italica
Seita.6G150800 10.0kb upstream 10.0kb upstream 10000 false scaffold_6: 26954826-26964825 Setaria italica
Seita.6G150800 10.0kb downstream 10.0kb downstream 18277 true scaffold_6: 26964826-26983102 Setaria italica
Seita.6G150800 10.0kb downstream 10.0kb downstream 10000 false scaffold_6: 26973103-26983102 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122187284 5267 Panicoideae View MSA
124570588 5269 Grass View MSA
122042056 5273 Angiosperm View MSA
121350076 5274 Embryophyte View MSA
123425500 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.965        
cufflinks 3.331        
cufflinks 6.458        
cufflinks 7.025        
cufflinks 11.325     High High
cufflinks 3.806        
cufflinks 8.568        
cufflinks 10.247       High
cufflinks 9.618        
cufflinks 1.881        
cufflinks 1.774        
cufflinks 0.635       Low
cufflinks 0.822       Low
cufflinks 3.623        
cufflinks 0.57       Low
cufflinks 18.356     High High
cufflinks 0.864       Low
cufflinks 4.962        
cufflinks 8.083        
cufflinks 0.657       Low

0 Strain