Gene : Seita.5G455100 S. italica v2.2
Defline:  (1 of 1) PTHR10799:SF573 - TRANSCRIPTION TERMINATION FACTOR 2 Genomic Order:  4551
Name:  ? Seita.5G455100 Secondary Identifier:  ? PAC:32686330
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.5G455100 0.5kb upstream 0.5kb upstream 7539 true scaffold_5: 46401351-46408889 Setaria italica
Seita.5G455100 0.5kb upstream 0.5kb upstream 500 false scaffold_5: 46401351-46401850 Setaria italica
Seita.5G455100 0.5kb downstream 0.5kb downstream 7539 true scaffold_5: 46401851-46409389 Setaria italica
Seita.5G455100 0.5kb downstream 0.5kb downstream 500 false scaffold_5: 46408890-46409389 Setaria italica
Seita.5G455100 1.0kb upstream 1.0kb upstream 8039 true scaffold_5: 46400851-46408889 Setaria italica
Seita.5G455100 1.0kb upstream 1.0kb upstream 1000 false scaffold_5: 46400851-46401850 Setaria italica
Seita.5G455100 1.0kb downstream 1.0kb downstream 8039 true scaffold_5: 46401851-46409889 Setaria italica
Seita.5G455100 1.0kb downstream 1.0kb downstream 1000 false scaffold_5: 46408890-46409889 Setaria italica
Seita.5G455100 2.0kb upstream 2.0kb upstream 9039 true scaffold_5: 46399851-46408889 Setaria italica
Seita.5G455100 2.0kb upstream 2.0kb upstream 2000 false scaffold_5: 46399851-46401850 Setaria italica
Seita.5G455100 2.0kb downstream 2.0kb downstream 9039 true scaffold_5: 46401851-46410889 Setaria italica
Seita.5G455100 2.0kb downstream 2.0kb downstream 2000 false scaffold_5: 46408890-46410889 Setaria italica
Seita.5G455100 5.0kb upstream 5.0kb upstream 12039 true scaffold_5: 46396851-46408889 Setaria italica
Seita.5G455100 5.0kb upstream 5.0kb upstream 5000 false scaffold_5: 46396851-46401850 Setaria italica
Seita.5G455100 5.0kb downstream 5.0kb downstream 12039 true scaffold_5: 46401851-46413889 Setaria italica
Seita.5G455100 5.0kb downstream 5.0kb downstream 5000 false scaffold_5: 46408890-46413889 Setaria italica
Seita.5G455100 10.0kb upstream 10.0kb upstream 17039 true scaffold_5: 46391851-46408889 Setaria italica
Seita.5G455100 10.0kb upstream 10.0kb upstream 10000 false scaffold_5: 46391851-46401850 Setaria italica
Seita.5G455100 10.0kb downstream 10.0kb downstream 17039 true scaffold_5: 46401851-46418889 Setaria italica
Seita.5G455100 10.0kb downstream 10.0kb downstream 10000 false scaffold_5: 46408890-46418889 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122191059 5267 Panicoideae View MSA
124571643 5269 Grass View MSA
122041978 5273 Angiosperm View MSA
121346055 5274 Embryophyte View MSA
123424068 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 14.743     High High
cufflinks 14.686     High High
cufflinks 9.357        
cufflinks 8.256        
cufflinks 8.037        
cufflinks 13.893     High High
cufflinks 11.772        
cufflinks 6.876       Low
cufflinks 11.318        
cufflinks 7.003       Low
cufflinks 11.227        
cufflinks 10.55        
cufflinks 10.916        
cufflinks 7.975        
cufflinks 11.53        
cufflinks 14.22     High High
cufflinks 8.852        
cufflinks 16.406     High High
cufflinks 7.781       Low
cufflinks 8.624        

0 Strain