Gene : Seita.5G350300 S. italica v2.2
Defline:  (1 of 1) PTHR22748//PTHR22748:SF8 - AP ENDONUCLEASE Genomic Order:  3503
Name:  ? Seita.5G350300 Secondary Identifier:  ? PAC:32685290
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.5G350300 0.5kb upstream 0.5kb upstream 12694 true scaffold_5: 39269921-39282614 Setaria italica
Seita.5G350300 0.5kb upstream 0.5kb upstream 500 false scaffold_5: 39269921-39270420 Setaria italica
Seita.5G350300 0.5kb downstream 0.5kb downstream 12694 true scaffold_5: 39270421-39283114 Setaria italica
Seita.5G350300 0.5kb downstream 0.5kb downstream 500 false scaffold_5: 39282615-39283114 Setaria italica
Seita.5G350300 1.0kb upstream 1.0kb upstream 13194 true scaffold_5: 39269421-39282614 Setaria italica
Seita.5G350300 1.0kb upstream 1.0kb upstream 1000 false scaffold_5: 39269421-39270420 Setaria italica
Seita.5G350300 1.0kb downstream 1.0kb downstream 13194 true scaffold_5: 39270421-39283614 Setaria italica
Seita.5G350300 1.0kb downstream 1.0kb downstream 1000 false scaffold_5: 39282615-39283614 Setaria italica
Seita.5G350300 2.0kb upstream 2.0kb upstream 14194 true scaffold_5: 39268421-39282614 Setaria italica
Seita.5G350300 2.0kb upstream 2.0kb upstream 2000 false scaffold_5: 39268421-39270420 Setaria italica
Seita.5G350300 2.0kb downstream 2.0kb downstream 14194 true scaffold_5: 39270421-39284614 Setaria italica
Seita.5G350300 2.0kb downstream 2.0kb downstream 2000 false scaffold_5: 39282615-39284614 Setaria italica
Seita.5G350300 5.0kb upstream 5.0kb upstream 17194 true scaffold_5: 39265421-39282614 Setaria italica
Seita.5G350300 5.0kb upstream 5.0kb upstream 5000 false scaffold_5: 39265421-39270420 Setaria italica
Seita.5G350300 5.0kb downstream 5.0kb downstream 17194 true scaffold_5: 39270421-39287614 Setaria italica
Seita.5G350300 5.0kb downstream 5.0kb downstream 5000 false scaffold_5: 39282615-39287614 Setaria italica
Seita.5G350300 10.0kb upstream 10.0kb upstream 22194 true scaffold_5: 39260421-39282614 Setaria italica
Seita.5G350300 10.0kb upstream 10.0kb upstream 10000 false scaffold_5: 39260421-39270420 Setaria italica
Seita.5G350300 10.0kb downstream 10.0kb downstream 22194 true scaffold_5: 39270421-39292614 Setaria italica
Seita.5G350300 10.0kb downstream 10.0kb downstream 10000 false scaffold_5: 39282615-39292614 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122198167 5267 Panicoideae View MSA
124586073 5269 Grass View MSA
122048084 5273 Angiosperm View MSA
121344358 5274 Embryophyte View MSA
123426911 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.108        
cufflinks 2.151       High
cufflinks 1.863       High
cufflinks 1.455        
cufflinks 1.214        
cufflinks 1.976       High
cufflinks 1.404        
cufflinks 1.29        
cufflinks 1.625        
cufflinks 0.583       Low
cufflinks 1.249        
cufflinks 0.421       Low
cufflinks 0.508       Low
cufflinks 1.697        
cufflinks 0.664        
cufflinks 1.356        
cufflinks 0.622       Low
cufflinks 0.715        
cufflinks 0.953        
cufflinks 0.639       Low

0 Strain