Gene : Seita.4G233200 S. italica v2.2
Defline:  (1 of 1) PTHR11668//PTHR11668:SF257 - SERINE/THREONINE PROTEIN PHOSPHATASE Genomic Order:  2332
Name:  ? Seita.4G233200 Secondary Identifier:  ? PAC:32708870
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.4G233200 0.5kb upstream 0.5kb upstream 5734 true scaffold_4: 35526785-35532518 Setaria italica
Seita.4G233200 0.5kb upstream 0.5kb upstream 500 false scaffold_4: 35532019-35532518 Setaria italica
Seita.4G233200 0.5kb downstream 0.5kb downstream 5734 true scaffold_4: 35526285-35532018 Setaria italica
Seita.4G233200 0.5kb downstream 0.5kb downstream 500 false scaffold_4: 35526285-35526784 Setaria italica
Seita.4G233200 1.0kb upstream 1.0kb upstream 6234 true scaffold_4: 35526785-35533018 Setaria italica
Seita.4G233200 1.0kb upstream 1.0kb upstream 1000 false scaffold_4: 35532019-35533018 Setaria italica
Seita.4G233200 1.0kb downstream 1.0kb downstream 6234 true scaffold_4: 35525785-35532018 Setaria italica
Seita.4G233200 1.0kb downstream 1.0kb downstream 1000 false scaffold_4: 35525785-35526784 Setaria italica
Seita.4G233200 2.0kb upstream 2.0kb upstream 7234 true scaffold_4: 35526785-35534018 Setaria italica
Seita.4G233200 2.0kb upstream 2.0kb upstream 2000 false scaffold_4: 35532019-35534018 Setaria italica
Seita.4G233200 2.0kb downstream 2.0kb downstream 7234 true scaffold_4: 35524785-35532018 Setaria italica
Seita.4G233200 2.0kb downstream 2.0kb downstream 2000 false scaffold_4: 35524785-35526784 Setaria italica
Seita.4G233200 5.0kb upstream 5.0kb upstream 10234 true scaffold_4: 35526785-35537018 Setaria italica
Seita.4G233200 5.0kb upstream 5.0kb upstream 5000 false scaffold_4: 35532019-35537018 Setaria italica
Seita.4G233200 5.0kb downstream 5.0kb downstream 10234 true scaffold_4: 35521785-35532018 Setaria italica
Seita.4G233200 5.0kb downstream 5.0kb downstream 5000 false scaffold_4: 35521785-35526784 Setaria italica
Seita.4G233200 10.0kb upstream 10.0kb upstream 15234 true scaffold_4: 35526785-35542018 Setaria italica
Seita.4G233200 10.0kb upstream 10.0kb upstream 10000 false scaffold_4: 35532019-35542018 Setaria italica
Seita.4G233200 10.0kb downstream 10.0kb downstream 15234 true scaffold_4: 35516785-35532018 Setaria italica
Seita.4G233200 10.0kb downstream 10.0kb downstream 10000 false scaffold_4: 35516785-35526784 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122194275 5267 Panicoideae View MSA
124578143 5269 Grass View MSA
122051234 5273 Angiosperm View MSA
121344776 5274 Embryophyte View MSA
123425839 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 18.966     High  
cufflinks 13.261     High  
cufflinks 8.493       Low
cufflinks 11.049     High  
cufflinks 9.758       Low
cufflinks 13.491     High  
cufflinks 12.983        
cufflinks 11.832        
cufflinks 10.058       Low
cufflinks 23.636     High High
cufflinks 16.678     High  
cufflinks 20.24     High  
cufflinks 18.422     High  
cufflinks 11.386        
cufflinks 19.846     High  
cufflinks 16.605     High  
cufflinks 21.222     High High
cufflinks 25.496     High High
cufflinks 10.149       Low
cufflinks 17.074     High  

0 Strain