Gene : Seita.3G002700 S. italica v2.2
Defline:  (1 of 1) PTHR10527:SF3 - FI21453P1 Genomic Order:  27
Name:  ? Seita.3G002700 Secondary Identifier:  ? PAC:32714118
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.3G002700 0.5kb upstream 0.5kb upstream 11622 true scaffold_3: 120283-131904 Setaria italica
Seita.3G002700 0.5kb upstream 0.5kb upstream 500 false scaffold_3: 131405-131904 Setaria italica
Seita.3G002700 0.5kb downstream 0.5kb downstream 11622 true scaffold_3: 119783-131404 Setaria italica
Seita.3G002700 0.5kb downstream 0.5kb downstream 500 false scaffold_3: 119783-120282 Setaria italica
Seita.3G002700 1.0kb upstream 1.0kb upstream 12122 true scaffold_3: 120283-132404 Setaria italica
Seita.3G002700 1.0kb upstream 1.0kb upstream 1000 false scaffold_3: 131405-132404 Setaria italica
Seita.3G002700 1.0kb downstream 1.0kb downstream 12122 true scaffold_3: 119283-131404 Setaria italica
Seita.3G002700 1.0kb downstream 1.0kb downstream 1000 false scaffold_3: 119283-120282 Setaria italica
Seita.3G002700 2.0kb upstream 2.0kb upstream 13122 true scaffold_3: 120283-133404 Setaria italica
Seita.3G002700 2.0kb upstream 2.0kb upstream 2000 false scaffold_3: 131405-133404 Setaria italica
Seita.3G002700 2.0kb downstream 2.0kb downstream 13122 true scaffold_3: 118283-131404 Setaria italica
Seita.3G002700 2.0kb downstream 2.0kb downstream 2000 false scaffold_3: 118283-120282 Setaria italica
Seita.3G002700 5.0kb upstream 5.0kb upstream 16122 true scaffold_3: 120283-136404 Setaria italica
Seita.3G002700 5.0kb upstream 5.0kb upstream 5000 false scaffold_3: 131405-136404 Setaria italica
Seita.3G002700 5.0kb downstream 5.0kb downstream 16122 true scaffold_3: 115283-131404 Setaria italica
Seita.3G002700 5.0kb downstream 5.0kb downstream 5000 false scaffold_3: 115283-120282 Setaria italica
Seita.3G002700 10.0kb upstream 10.0kb upstream 21122 true scaffold_3: 120283-141404 Setaria italica
Seita.3G002700 10.0kb upstream 10.0kb upstream 10000 false scaffold_3: 131405-141404 Setaria italica
Seita.3G002700 10.0kb downstream 10.0kb downstream 21122 true scaffold_3: 110283-131404 Setaria italica
Seita.3G002700 10.0kb downstream 10.0kb downstream 10000 false scaffold_3: 110283-120282 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122026329 5273 Angiosperm View MSA
122182698 5267 Panicoideae View MSA
124571402 5269 Grass View MSA
121344720 5274 Embryophyte View MSA
123426345 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 15.201     High High
cufflinks 11.051        
cufflinks 9.675        
cufflinks 7.483       Low
cufflinks 6.553       Low
cufflinks 11.161        
cufflinks 11.635        
cufflinks 9.768        
cufflinks 8.072       Low
cufflinks 13.957       High
cufflinks 16.087     High High
cufflinks 9.346        
cufflinks 10.632        
cufflinks 9.533        
cufflinks 12.809        
cufflinks 12.087     High  
cufflinks 10.345        
cufflinks 13.885     High High
cufflinks 7.821       Low
cufflinks 11.398        

0 Strain