Gene : Seita.1G364300 S. italica v2.2
Defline:  (1 of 1) PTHR12686 - 3'-5' EXORIBONUCLEASE CSL4-RELATED Genomic Order:  3643
Name:  ? Seita.1G364300 Secondary Identifier:  ? PAC:32695875
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.1G364300 0.5kb upstream 0.5kb upstream 3697 true scaffold_1: 41244984-41248680 Setaria italica
Seita.1G364300 0.5kb upstream 0.5kb upstream 500 false scaffold_1: 41248181-41248680 Setaria italica
Seita.1G364300 0.5kb downstream 0.5kb downstream 3697 true scaffold_1: 41244484-41248180 Setaria italica
Seita.1G364300 0.5kb downstream 0.5kb downstream 500 false scaffold_1: 41244484-41244983 Setaria italica
Seita.1G364300 1.0kb upstream 1.0kb upstream 4197 true scaffold_1: 41244984-41249180 Setaria italica
Seita.1G364300 1.0kb upstream 1.0kb upstream 1000 false scaffold_1: 41248181-41249180 Setaria italica
Seita.1G364300 1.0kb downstream 1.0kb downstream 4197 true scaffold_1: 41243984-41248180 Setaria italica
Seita.1G364300 1.0kb downstream 1.0kb downstream 1000 false scaffold_1: 41243984-41244983 Setaria italica
Seita.1G364300 2.0kb upstream 2.0kb upstream 5197 true scaffold_1: 41244984-41250180 Setaria italica
Seita.1G364300 2.0kb upstream 2.0kb upstream 2000 false scaffold_1: 41248181-41250180 Setaria italica
Seita.1G364300 2.0kb downstream 2.0kb downstream 5197 true scaffold_1: 41242984-41248180 Setaria italica
Seita.1G364300 2.0kb downstream 2.0kb downstream 2000 false scaffold_1: 41242984-41244983 Setaria italica
Seita.1G364300 5.0kb upstream 5.0kb upstream 8197 true scaffold_1: 41244984-41253180 Setaria italica
Seita.1G364300 5.0kb upstream 5.0kb upstream 5000 false scaffold_1: 41248181-41253180 Setaria italica
Seita.1G364300 5.0kb downstream 5.0kb downstream 8197 true scaffold_1: 41239984-41248180 Setaria italica
Seita.1G364300 5.0kb downstream 5.0kb downstream 5000 false scaffold_1: 41239984-41244983 Setaria italica
Seita.1G364300 10.0kb upstream 10.0kb upstream 13197 true scaffold_1: 41244984-41258180 Setaria italica
Seita.1G364300 10.0kb upstream 10.0kb upstream 10000 false scaffold_1: 41248181-41258180 Setaria italica
Seita.1G364300 10.0kb downstream 10.0kb downstream 13197 true scaffold_1: 41234984-41248180 Setaria italica
Seita.1G364300 10.0kb downstream 10.0kb downstream 10000 false scaffold_1: 41234984-41244983 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122026382 5273 Angiosperm View MSA
122189374 5267 Panicoideae View MSA
124576449 5269 Grass View MSA
121347552 5274 Embryophyte View MSA
123423947 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 3.111        
cufflinks 4.82        
cufflinks 0.881       Low
cufflinks 0.253       Low
cufflinks 0.512       Low
cufflinks 4.84        
cufflinks 1.953        
cufflinks 4.073        
cufflinks 2.614        
cufflinks 6.482       High
cufflinks 3.304        
cufflinks 4.3        
cufflinks 3.012        
cufflinks 2.691        
cufflinks 3.782        
cufflinks 1.603        
cufflinks 6.384       High
cufflinks 2.582        
cufflinks 0.718       Low
cufflinks 5.16        

0 Strain