Protein Domain : IPR029262

Type:  Domain Name:  DNA-directed RNA polymerase N-terminal domain
Description:  This is the N-terminal domain of DNA-directed RNA polymerase. This domain has a role in interaction with regions of upstream promoter DNA and the nascent RNA chain, leading to the processivity of the enzyme []. In order to make mRNA transcripts the RNA polymerase undergoes a transition from the initiation phase (which only makes short fragments of RNA) to an elongation phase. This domain undergoes a structural change in the transition from initiation to elongation phase. The structural change results in abolition of the promoter binding site, creation of a channel accommodating the heteroduplex in the active site, and formation of an exit tunnel which the RNA transcript passes through after peeling off the heteroduplex []. Short Name:  RPOL_N

0 Child Features

0 Contains

2 Cross Referencess

Identifier
PF14700
G3DSA:1.10.1320.10

0 Found In

0 GO Annotation

0 Ontology Annotations

0 Parent Features

3256 Proteins

DB identifier UniProt Accession Secondary Identifier Organism Name Length
83811 PAC:15417128 Selaginella moellendorffii 472  
85910 D8R5B1 PAC:15401370 Selaginella moellendorffii 831  
evm.TU.contig_32259.1 PAC:16430081 Carica papaya 441  
evm.model.supercontig_14.252 PAC:16408761 Carica papaya 918  
evm.model.supercontig_46.194 PAC:16420482 Carica papaya 894  
30114.m000528 B9SQY6 PAC:16817949 Ricinus communis 1000  
30138.m003886 B9RLF2 PAC:16819255 Ricinus communis 997  
28202.m000133 B9T5S7 PAC:16800316 Ricinus communis 395  
28202.m000132 B9T5S6 PAC:16800315 Ricinus communis 589  
Cucsa.090030.1 PAC:16957240 Cucumis sativus 975  
Cucsa.149630.1 PAC:16964303 Cucumis sativus 672  
Cucsa.238450.1 A0A0A0KXM5 PAC:16970721 Cucumis sativus 989  
Cucsa.284310.4 PAC:16974676 Cucumis sativus 627  
Cucsa.284310.3 PAC:16974675 Cucumis sativus 867  
Cucsa.284310.1 PAC:16974673 Cucumis sativus 973  
Cucsa.284310.2 PAC:16974674 Cucumis sativus 971  
orange1.1g036741m A0A067GAC8 PAC:18135206 Citrus sinensis 1030  
orange1.1g002019m A0A067FVT5 PAC:18121757 Citrus sinensis 980  
orange1.1g005638m A0A067G3I7 PAC:18121759 Citrus sinensis 686  
orange1.1g003002m A0A067G485 PAC:18121758 Citrus sinensis 858  
orange1.1g011172m A0A067FSE5 PAC:18121760 Citrus sinensis 492  
orange1.1g001798m A0A067FGH5 PAC:18104153 Citrus sinensis 1012  
orange1.1g002216m A0A067F4I2 PAC:18104155 Citrus sinensis 952  
orange1.1g003263m A0A067F836 PAC:18104156 Citrus sinensis 835  
orange1.1g001792m A0A067F831 PAC:18104152 Citrus sinensis 1012  
orange1.1g001795m A0A067FGH5 PAC:18104151 Citrus sinensis 1012  
orange1.1g001982m A0A067F4M8 PAC:18104154 Citrus sinensis 986  
AT5G15700.2 F4KB75 PAC:19672820 Arabidopsis thaliana 1051  
AT5G15700.1 Q9LFV6 PAC:19672821 Arabidopsis thaliana 1011  
AT1G21080.1 Q9LPU3 PAC:19651714 Arabidopsis thaliana 391  

2 Publications

First Author Title Year Journal Volume Pages PubMed ID
            12242451
            9670025