Protein Domain : IPR005729

Type:  Family Name:  Ribosomal protein S10, eukaryotic/archaeal
Description:  Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ].This model describes the archaeal ribosomal protein and its equivalents in eukaryotes. Short Name:  Ribosomal_S10_euk/arc

0 Child Features

1 Contains

DB identifier Type Name
IPR018268 Conserved_site Ribosomal protein S10, conserved site

1 Cross References

Identifier
TIGR01046

0 Found In

3 GO Annotations

GO Term Gene Name
GO:0003735 IPR005729
GO:0006412 IPR005729
GO:0015935 IPR005729

3 Ontology Annotations

GO Term Gene Name
GO:0003735 IPR005729
GO:0006412 IPR005729
GO:0015935 IPR005729

1 Parent Features

DB identifier Type Name
IPR001848 Family Ribosomal protein S10

751 Proteins

DB identifier UniProt Accession Secondary Identifier Organism Name Length
115495 D8SF09 PAC:15422096 Selaginella moellendorffii 115  
evm.model.supercontig_3.289 PAC:16416578 Carica papaya 122  
evm.model.supercontig_65.28 PAC:16424435 Carica papaya 122  
30147.m014191 B9R9P7 PAC:16820203 Ricinus communis 124  
Cucsa.115650.1 A0A0A0KL82 PAC:16960497 Cucumis sativus 121  
Cucsa.115650.2 A0A0A0KL82 PAC:16960498 Cucumis sativus 121  
Cucsa.115650.3 PAC:16960499 Cucumis sativus 111  
Cucsa.251470.2 PAC:16971794 Cucumis sativus 122  
Cucsa.251470.1 PAC:16971793 Cucumis sativus 122  
orange1.1g033482m PAC:18127830 Citrus sinensis 118  
AT5G62300.2 P49200 PAC:19665493 Arabidopsis thaliana 124  
AT5G62300.1 P49200 PAC:19665492 Arabidopsis thaliana 124  
AT3G45030.1 P49200 PAC:19659530 Arabidopsis thaliana 124  
AT3G47370.1 Q9STY6 PAC:19664060 Arabidopsis thaliana 122  
AT3G47370.3 Q9STY6 PAC:19664062 Arabidopsis thaliana 122  
AT3G47370.2 Q9STY6 PAC:19664061 Arabidopsis thaliana 122  
Thhalv10010824m V4L677 PAC:20207776 Eutrema salsugineum 122  
Thhalv10010823m V4L677 PAC:20207775 Eutrema salsugineum 122  
Thhalv10015032m V4KZL1 PAC:20204358 Eutrema salsugineum 123  
Thhalv10015030m V4KZL1 PAC:20204359 Eutrema salsugineum 123  
Thhalv10005136m V4KWF5 PAC:20199369 Eutrema salsugineum 122  
Ciclev10006224m V4S3T5 PAC:20791253 Citrus clementina 122  
Ciclev10006225m V4S3T5 PAC:20791252 Citrus clementina 122  
Lus10038910 PAC:23150282 Linum usitatissimum 122  
Lus10027194 PAC:23145588 Linum usitatissimum 137  
Lus10031705 PAC:23180566 Linum usitatissimum 123  
Lus10031706 PAC:23180626 Linum usitatissimum 122  
Lus10031126 PAC:23150948 Linum usitatissimum 122  
Potri.015G129800.1 A9PD23 PAC:27018954 Populus trichocarpa 123  
Potri.012G128300.1 A9PAL8 PAC:27050985 Populus trichocarpa 123  

3 Publications

First Author Title Year Journal Volume Pages PubMed ID
            11297922
            11290319
            11114498