Protein Domain : IPR001266

Type:  Family Name:  Ribosomal protein S19e
Description:  Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ].This family includes a number of eukaryotic and archaebacterial ribosomal proteins; mammalian S19, Drosophila S19, Ascaris lumbricoidesS19g (ALEP-1) and S19s, yeast YS16 (RP55A and RP55B), Aspergillus S16 and Haloarcula marismortuiHS12. Short Name:  Ribosomal_S19e

1 Child Features

DB identifier Type Name
IPR027548 Family Ribosomal protein S19e, archaeal

1 Contains

DB identifier Type Name
IPR018277 Conserved_site Ribosomal protein S19e, conserved site

3 Cross Referencess

Identifier
PTHR11710
PF01090
PD003854

0 Found In

3 GO Annotations

GO Term Gene Name
GO:0003735 IPR001266
GO:0006412 IPR001266
GO:0005840 IPR001266

3 Ontology Annotations

GO Term Gene Name
GO:0003735 IPR001266
GO:0006412 IPR001266
GO:0005840 IPR001266

0 Parent Features

903 Proteins

DB identifier UniProt Accession Secondary Identifier Organism Name Length
153225 D8S7K0 PAC:15421068 Selaginella moellendorffii 146  
evm.model.supercontig_14.164 PAC:16408663 Carica papaya 143  
evm.model.supercontig_624.1 PAC:16424080 Carica papaya 143  
29933.m001419 B9SFA9 PAC:16814147 Ricinus communis 67  
30167.m000876 B9S5F0 PAC:16821007 Ricinus communis 143  
29630.m000805 B9SJC6 PAC:16804050 Ricinus communis 143  
29630.m000803 B9SJC5 PAC:16804049 Ricinus communis 143  
Cucsa.084560.1 PAC:16956552 Cucumis sativus 179  
Cucsa.157920.1 A0A0A0KSI3 PAC:16965045 Cucumis sativus 143  
orange1.1g033029m A0A067GBL1 PAC:18135337 Citrus sinensis 129  
orange1.1g032309m A0A067GB82 PAC:18135336 Citrus sinensis 143  
orange1.1g034587m A0A067FZI8 PAC:18135338 Citrus sinensis 90  
orange1.1g032124m A0A067EHF5 PAC:18134911 Citrus sinensis 147  
orange1.1g032244m A0A067ETR4 PAC:18134913 Citrus sinensis 144  
orange1.1g032099m A0A067EHF5 PAC:18134912 Citrus sinensis 147  
AT5G15520.1 Q9LF30 PAC:19670129 Arabidopsis thaliana 143  
AT5G61170.1 Q9FNP8 PAC:19666775 Arabidopsis thaliana 143  
AT3G02080.1 Q9SGA6 PAC:19661337 Arabidopsis thaliana 143  
Thhalv10022439m V4MBQ1 PAC:20183440 Eutrema salsugineum 143  
Thhalv10015994m V4N5G4 PAC:20205308 Eutrema salsugineum 275  
Thhalv10005090m V4MK78 PAC:20199565 Eutrema salsugineum 143  
Ciclev10013054m V4UXJ0 PAC:20797452 Citrus clementina 143  
Ciclev10022735m V4VMA2 PAC:20811068 Citrus clementina 144  
Ciclev10022728m V4TQF8 PAC:20811067 Citrus clementina 145  
Ciclev10022865m V4TVK6 PAC:20811069 Citrus clementina 126  
Lus10021865 PAC:23157976 Linum usitatissimum 123  
Lus10013188 PAC:23166649 Linum usitatissimum 150  
Lus10030702 PAC:23155389 Linum usitatissimum 129  
Lus10032992 PAC:23160320 Linum usitatissimum 120  
Lus10033532 PAC:23143413 Linum usitatissimum 150  

3 Publications

First Author Title Year Journal Volume Pages PubMed ID
            11297922
            11290319
            11114498