Gene : Eucgr.K01396 E. grandis v2.0
Defline:  (1 of 1) PTHR24096:SF219 - LONG CHAIN ACYL-COA SYNTHETASE 8 Genomic Order:  1173
Name:  ? Eucgr.K01396 Secondary Identifier:  ? PAC:32069398
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Sequence Feature Displayer

Ontology Annotation Displayer

13 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Egrandis PWY-1121 Eucalyptus grandis pathologic  
Egrandis PWY-321 Eucalyptus grandis pathologic  
Egrandis PWY-5136 Eucalyptus grandis pathologic  
Egrandis PWY-5143 Eucalyptus grandis pathologic  
Egrandis PWY-5147 Eucalyptus grandis pathologic  
Egrandis PWY-5156 Eucalyptus grandis pathologic  
Egrandis PWY-561 Eucalyptus grandis pathologic  
Egrandis PWY-5885 Eucalyptus grandis pathologic  
Egrandis PWY-5971 Eucalyptus grandis pathologic  
Egrandis PWY-5989 Eucalyptus grandis pathologic  
Egrandis PWY66-389 Eucalyptus grandis pathologic  
Egrandis PWY-6733 Eucalyptus grandis pathologic  
Egrandis PWY-6803 Eucalyptus grandis pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Eucgr.K01396 0.5kb upstream 0.5kb upstream 6900 true Chr11: 17339012-17345911 Eucalyptus grandis
Eucgr.K01396 0.5kb upstream 0.5kb upstream 500 false Chr11: 17339012-17339511 Eucalyptus grandis
Eucgr.K01396 0.5kb downstream 0.5kb downstream 6900 true Chr11: 17339512-17346411 Eucalyptus grandis
Eucgr.K01396 0.5kb downstream 0.5kb downstream 500 false Chr11: 17345912-17346411 Eucalyptus grandis
Eucgr.K01396 1.0kb upstream 1.0kb upstream 7400 true Chr11: 17338512-17345911 Eucalyptus grandis
Eucgr.K01396 1.0kb upstream 1.0kb upstream 1000 false Chr11: 17338512-17339511 Eucalyptus grandis
Eucgr.K01396 1.0kb downstream 1.0kb downstream 7400 true Chr11: 17339512-17346911 Eucalyptus grandis
Eucgr.K01396 1.0kb downstream 1.0kb downstream 1000 false Chr11: 17345912-17346911 Eucalyptus grandis
Eucgr.K01396 2.0kb upstream 2.0kb upstream 8400 true Chr11: 17337512-17345911 Eucalyptus grandis
Eucgr.K01396 2.0kb upstream 2.0kb upstream 2000 false Chr11: 17337512-17339511 Eucalyptus grandis
Eucgr.K01396 2.0kb downstream 2.0kb downstream 8400 true Chr11: 17339512-17347911 Eucalyptus grandis
Eucgr.K01396 2.0kb downstream 2.0kb downstream 2000 false Chr11: 17345912-17347911 Eucalyptus grandis
Eucgr.K01396 5.0kb upstream 5.0kb upstream 11400 true Chr11: 17334512-17345911 Eucalyptus grandis
Eucgr.K01396 5.0kb upstream 5.0kb upstream 5000 false Chr11: 17334512-17339511 Eucalyptus grandis
Eucgr.K01396 5.0kb downstream 5.0kb downstream 11400 true Chr11: 17339512-17350911 Eucalyptus grandis
Eucgr.K01396 5.0kb downstream 5.0kb downstream 5000 false Chr11: 17345912-17350911 Eucalyptus grandis
Eucgr.K01396 10.0kb upstream 10.0kb upstream 16400 true Chr11: 17329512-17345911 Eucalyptus grandis
Eucgr.K01396 10.0kb upstream 10.0kb upstream 10000 false Chr11: 17329512-17339511 Eucalyptus grandis
Eucgr.K01396 10.0kb downstream 10.0kb downstream 16400 true Chr11: 17339512-17355911 Eucalyptus grandis
Eucgr.K01396 10.0kb downstream 10.0kb downstream 10000 false Chr11: 17345912-17355911 Eucalyptus grandis

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124066498 5270 Rosid View MSA
123736490 5271 Pentapetalae View MSA
122788185 5272 Eudicot View MSA
122046932 5273 Angiosperm View MSA
121348478 5274 Embryophyte View MSA
123380877 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 29.5487 0.0 74.4806    
cufflinks 23.737 0.0 54.6402   Low
cufflinks 82.0449 0.0 224.548 High  
cufflinks 31.8426 0.0 82.7846 High  
cufflinks 98.4562 0.0 250.536 High  
cufflinks 99.5399 0.0 250.237 High High

0 Strain