Gene : Eucgr.J00856 E. grandis v2.0
Defline:  (1 of 1) PTHR11777:SF18 - ALANINE--TRNA LIGASE, CYTOPLASMIC Genomic Order:  751
Name:  ? Eucgr.J00856 Secondary Identifier:  ? PAC:32034548
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Egrandis TRNA-CHARGING-PWY Eucalyptus grandis pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Eucgr.J00856 0.5kb upstream 0.5kb upstream 11101 true Chr10: 9205936-9217036 Eucalyptus grandis
Eucgr.J00856 0.5kb upstream 0.5kb upstream 500 false Chr10: 9205936-9206435 Eucalyptus grandis
Eucgr.J00856 0.5kb downstream 0.5kb downstream 11101 true Chr10: 9206436-9217536 Eucalyptus grandis
Eucgr.J00856 0.5kb downstream 0.5kb downstream 500 false Chr10: 9217037-9217536 Eucalyptus grandis
Eucgr.J00856 1.0kb upstream 1.0kb upstream 11601 true Chr10: 9205436-9217036 Eucalyptus grandis
Eucgr.J00856 1.0kb upstream 1.0kb upstream 1000 false Chr10: 9205436-9206435 Eucalyptus grandis
Eucgr.J00856 1.0kb downstream 1.0kb downstream 11601 true Chr10: 9206436-9218036 Eucalyptus grandis
Eucgr.J00856 1.0kb downstream 1.0kb downstream 1000 false Chr10: 9217037-9218036 Eucalyptus grandis
Eucgr.J00856 2.0kb upstream 2.0kb upstream 12601 true Chr10: 9204436-9217036 Eucalyptus grandis
Eucgr.J00856 2.0kb upstream 2.0kb upstream 2000 false Chr10: 9204436-9206435 Eucalyptus grandis
Eucgr.J00856 2.0kb downstream 2.0kb downstream 12601 true Chr10: 9206436-9219036 Eucalyptus grandis
Eucgr.J00856 2.0kb downstream 2.0kb downstream 2000 false Chr10: 9217037-9219036 Eucalyptus grandis
Eucgr.J00856 5.0kb upstream 5.0kb upstream 15601 true Chr10: 9201436-9217036 Eucalyptus grandis
Eucgr.J00856 5.0kb upstream 5.0kb upstream 5000 false Chr10: 9201436-9206435 Eucalyptus grandis
Eucgr.J00856 5.0kb downstream 5.0kb downstream 15601 true Chr10: 9206436-9222036 Eucalyptus grandis
Eucgr.J00856 5.0kb downstream 5.0kb downstream 5000 false Chr10: 9217037-9222036 Eucalyptus grandis
Eucgr.J00856 10.0kb upstream 10.0kb upstream 20601 true Chr10: 9196436-9217036 Eucalyptus grandis
Eucgr.J00856 10.0kb upstream 10.0kb upstream 10000 false Chr10: 9196436-9206435 Eucalyptus grandis
Eucgr.J00856 10.0kb downstream 10.0kb downstream 20601 true Chr10: 9206436-9227036 Eucalyptus grandis
Eucgr.J00856 10.0kb downstream 10.0kb downstream 10000 false Chr10: 9217037-9227036 Eucalyptus grandis

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124063784 5270 Rosid View MSA
123740226 5271 Pentapetalae View MSA
122791486 5272 Eudicot View MSA
122047019 5273 Angiosperm View MSA
121346985 5274 Embryophyte View MSA
123424131 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 29.7622 0.0 67.2559 High  
cufflinks 16.2873 0.0 36.1038   Low
cufflinks 24.0867 0.0 54.0021    
cufflinks 19.3005 0.0 42.9969    
cufflinks 18.5981 0.0 41.3189    
cufflinks 43.5399 0.0 100.699 High High

0 Strain