Gene : Eucgr.F01030 E. grandis v2.0
Defline:  (1 of 2) PF00954//PF01453//PF01683//PF07714//PF08276//PF11883 - S-locus glycoprotein domain (S_locus_glycop) // D-mannose binding lectin (B_lectin) // EB module (EB) // Protein tyrosine kinase (Pkinase_Tyr) // PAN-like domain (PAN_2) // Domain of unknown function (DUF3403) (DUF3403) Genomic Order:  902
Name:  ? Eucgr.F01030 Secondary Identifier:  ? PAC:32054138
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Eucgr.F01030 0.5kb upstream 0.5kb upstream 4390 true Chr06: 14472160-14476549 Eucalyptus grandis
Eucgr.F01030 0.5kb upstream 0.5kb upstream 500 false Chr06: 14476050-14476549 Eucalyptus grandis
Eucgr.F01030 0.5kb downstream 0.5kb downstream 4390 true Chr06: 14471660-14476049 Eucalyptus grandis
Eucgr.F01030 0.5kb downstream 0.5kb downstream 500 false Chr06: 14471660-14472159 Eucalyptus grandis
Eucgr.F01030 1.0kb upstream 1.0kb upstream 4890 true Chr06: 14472160-14477049 Eucalyptus grandis
Eucgr.F01030 1.0kb upstream 1.0kb upstream 1000 false Chr06: 14476050-14477049 Eucalyptus grandis
Eucgr.F01030 1.0kb downstream 1.0kb downstream 4890 true Chr06: 14471160-14476049 Eucalyptus grandis
Eucgr.F01030 1.0kb downstream 1.0kb downstream 1000 false Chr06: 14471160-14472159 Eucalyptus grandis
Eucgr.F01030 2.0kb upstream 2.0kb upstream 5890 true Chr06: 14472160-14478049 Eucalyptus grandis
Eucgr.F01030 2.0kb upstream 2.0kb upstream 2000 false Chr06: 14476050-14478049 Eucalyptus grandis
Eucgr.F01030 2.0kb downstream 2.0kb downstream 5890 true Chr06: 14470160-14476049 Eucalyptus grandis
Eucgr.F01030 2.0kb downstream 2.0kb downstream 2000 false Chr06: 14470160-14472159 Eucalyptus grandis
Eucgr.F01030 5.0kb upstream 5.0kb upstream 8890 true Chr06: 14472160-14481049 Eucalyptus grandis
Eucgr.F01030 5.0kb upstream 5.0kb upstream 5000 false Chr06: 14476050-14481049 Eucalyptus grandis
Eucgr.F01030 5.0kb downstream 5.0kb downstream 8890 true Chr06: 14467160-14476049 Eucalyptus grandis
Eucgr.F01030 5.0kb downstream 5.0kb downstream 5000 false Chr06: 14467160-14472159 Eucalyptus grandis
Eucgr.F01030 10.0kb upstream 10.0kb upstream 13890 true Chr06: 14472160-14486049 Eucalyptus grandis
Eucgr.F01030 10.0kb upstream 10.0kb upstream 10000 false Chr06: 14476050-14486049 Eucalyptus grandis
Eucgr.F01030 10.0kb downstream 10.0kb downstream 13890 true Chr06: 14462160-14476049 Eucalyptus grandis
Eucgr.F01030 10.0kb downstream 10.0kb downstream 10000 false Chr06: 14462160-14472159 Eucalyptus grandis

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124074937 5270 Rosid View MSA
123753765 5271 Pentapetalae View MSA
122797900 5272 Eudicot View MSA
122051692 5273 Angiosperm View MSA
123429169 5275 Viridiplantae View MSA
121351748 5274 Embryophyte View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 32.1864 0.0 75.1949 High High
cufflinks 3.59651 0.0 8.55969    
cufflinks 24.3972 0.0 56.1651    
cufflinks 3.47673 0.0 8.31242   Low
cufflinks 5.0551 0.0 13.6887    
cufflinks 26.9731 0.0 62.1418    

0 Strain