Gene : Eucgr.A02953 E. grandis v2.0
Defline:  (1 of 235) PF01535//PF13041 - PPR repeat (PPR) // PPR repeat family (PPR_2) Genomic Order:  2655
Name:  ? Eucgr.A02953 Secondary Identifier:  ? PAC:32048333
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Eucgr.A02953 0.5kb upstream 0.5kb upstream 6991 true Chr01: 44578578-44585568 Eucalyptus grandis
Eucgr.A02953 0.5kb upstream 0.5kb upstream 500 false Chr01: 44585069-44585568 Eucalyptus grandis
Eucgr.A02953 0.5kb downstream 0.5kb downstream 6991 true Chr01: 44578078-44585068 Eucalyptus grandis
Eucgr.A02953 0.5kb downstream 0.5kb downstream 500 false Chr01: 44578078-44578577 Eucalyptus grandis
Eucgr.A02953 1.0kb upstream 1.0kb upstream 7491 true Chr01: 44578578-44586068 Eucalyptus grandis
Eucgr.A02953 1.0kb upstream 1.0kb upstream 1000 false Chr01: 44585069-44586068 Eucalyptus grandis
Eucgr.A02953 1.0kb downstream 1.0kb downstream 7491 true Chr01: 44577578-44585068 Eucalyptus grandis
Eucgr.A02953 1.0kb downstream 1.0kb downstream 1000 false Chr01: 44577578-44578577 Eucalyptus grandis
Eucgr.A02953 2.0kb upstream 2.0kb upstream 8491 true Chr01: 44578578-44587068 Eucalyptus grandis
Eucgr.A02953 2.0kb upstream 2.0kb upstream 2000 false Chr01: 44585069-44587068 Eucalyptus grandis
Eucgr.A02953 2.0kb downstream 2.0kb downstream 8491 true Chr01: 44576578-44585068 Eucalyptus grandis
Eucgr.A02953 2.0kb downstream 2.0kb downstream 2000 false Chr01: 44576578-44578577 Eucalyptus grandis
Eucgr.A02953 5.0kb upstream 5.0kb upstream 11491 true Chr01: 44578578-44590068 Eucalyptus grandis
Eucgr.A02953 5.0kb upstream 5.0kb upstream 5000 false Chr01: 44585069-44590068 Eucalyptus grandis
Eucgr.A02953 5.0kb downstream 5.0kb downstream 11491 true Chr01: 44573578-44585068 Eucalyptus grandis
Eucgr.A02953 5.0kb downstream 5.0kb downstream 5000 false Chr01: 44573578-44578577 Eucalyptus grandis
Eucgr.A02953 10.0kb upstream 10.0kb upstream 16491 true Chr01: 44578578-44595068 Eucalyptus grandis
Eucgr.A02953 10.0kb upstream 10.0kb upstream 10000 false Chr01: 44585069-44595068 Eucalyptus grandis
Eucgr.A02953 10.0kb downstream 10.0kb downstream 16491 true Chr01: 44568578-44585068 Eucalyptus grandis
Eucgr.A02953 10.0kb downstream 10.0kb downstream 10000 false Chr01: 44568578-44578577 Eucalyptus grandis

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124064503 5270 Rosid View MSA
123744976 5271 Pentapetalae View MSA
122788115 5272 Eudicot View MSA
122047160 5273 Angiosperm View MSA
123429046 5275 Viridiplantae View MSA
121350621 5274 Embryophyte View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.48036 0.0 5.78644    
cufflinks 0.536522 0.0 1.44308 Low  
cufflinks 1.61148 0.0 3.89199    
cufflinks 0.2549 0.0 0.737036 Low Low
cufflinks 0.609309 0.0 1.62413 Low  
cufflinks 6.77691 0.0 15.0325   High

0 Strain