Gene : Eucgr.A01487 E. grandis v2.0
Defline:  (1 of 2) PTHR11558:SF25 - SPERMINE SYNTHASE Genomic Order:  1296
Name:  ? Eucgr.A01487 Secondary Identifier:  ? PAC:32045986
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Egrandis BSUBPOLYAMSYN-PWY Eucalyptus grandis pathologic  
Egrandis PWY-7528 Eucalyptus grandis pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Eucgr.A01487 0.5kb upstream 0.5kb upstream 5635 true Chr01: 28758842-28764476 Eucalyptus grandis
Eucgr.A01487 0.5kb upstream 0.5kb upstream 500 false Chr01: 28763977-28764476 Eucalyptus grandis
Eucgr.A01487 0.5kb downstream 0.5kb downstream 5635 true Chr01: 28758342-28763976 Eucalyptus grandis
Eucgr.A01487 0.5kb downstream 0.5kb downstream 500 false Chr01: 28758342-28758841 Eucalyptus grandis
Eucgr.A01487 1.0kb upstream 1.0kb upstream 6135 true Chr01: 28758842-28764976 Eucalyptus grandis
Eucgr.A01487 1.0kb upstream 1.0kb upstream 1000 false Chr01: 28763977-28764976 Eucalyptus grandis
Eucgr.A01487 1.0kb downstream 1.0kb downstream 6135 true Chr01: 28757842-28763976 Eucalyptus grandis
Eucgr.A01487 1.0kb downstream 1.0kb downstream 1000 false Chr01: 28757842-28758841 Eucalyptus grandis
Eucgr.A01487 2.0kb upstream 2.0kb upstream 7135 true Chr01: 28758842-28765976 Eucalyptus grandis
Eucgr.A01487 2.0kb upstream 2.0kb upstream 2000 false Chr01: 28763977-28765976 Eucalyptus grandis
Eucgr.A01487 2.0kb downstream 2.0kb downstream 7135 true Chr01: 28756842-28763976 Eucalyptus grandis
Eucgr.A01487 2.0kb downstream 2.0kb downstream 2000 false Chr01: 28756842-28758841 Eucalyptus grandis
Eucgr.A01487 5.0kb upstream 5.0kb upstream 10135 true Chr01: 28758842-28768976 Eucalyptus grandis
Eucgr.A01487 5.0kb upstream 5.0kb upstream 5000 false Chr01: 28763977-28768976 Eucalyptus grandis
Eucgr.A01487 5.0kb downstream 5.0kb downstream 10135 true Chr01: 28753842-28763976 Eucalyptus grandis
Eucgr.A01487 5.0kb downstream 5.0kb downstream 5000 false Chr01: 28753842-28758841 Eucalyptus grandis
Eucgr.A01487 10.0kb upstream 10.0kb upstream 15135 true Chr01: 28758842-28773976 Eucalyptus grandis
Eucgr.A01487 10.0kb upstream 10.0kb upstream 10000 false Chr01: 28763977-28773976 Eucalyptus grandis
Eucgr.A01487 10.0kb downstream 10.0kb downstream 15135 true Chr01: 28748842-28763976 Eucalyptus grandis
Eucgr.A01487 10.0kb downstream 10.0kb downstream 10000 false Chr01: 28748842-28758841 Eucalyptus grandis

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124062886 5270 Rosid View MSA
123739892 5271 Pentapetalae View MSA
122785821 5272 Eudicot View MSA
122045666 5273 Angiosperm View MSA
121310481 5274 Embryophyte View MSA
123347953 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 21.1535 0.0 52.6268    
cufflinks 8.49865 0.0 19.6575    
cufflinks 30.5106 0.0 75.3788 High High
cufflinks 5.84605 0.0 15.5219   Low
cufflinks 5.52881 0.0 13.354   Low
cufflinks 23.6423 0.0 53.2321    

0 Strain