Gene : orange1.1g007945m.g C. sinensis v1.1
Defline:  (1 of 1) PTHR32098:SF5 - LYCOPENE BETA/EPSILON CYCLASE PROTEIN Genomic Order:  5
Name:  ? orange1.1g007945m.g Secondary Identifier:  ? PAC:18106634
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Sequence Feature Displayer

Ontology Annotation Displayer

3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Csinensis CAROTENOID-PWY Citrus sinensis pathologic  
Csinensis PWY-5943 Citrus sinensis pathologic  
Csinensis PWY-5947 Citrus sinensis pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
orange1.1g007945m.g 0.5kb upstream 0.5kb upstream 5757 true scaffold00126: 54657-60413 Citrus sinensis
orange1.1g007945m.g 0.5kb upstream 0.5kb upstream 500 false scaffold00126: 59914-60413 Citrus sinensis
orange1.1g007945m.g 0.5kb downstream 0.5kb downstream 5757 true scaffold00126: 54157-59913 Citrus sinensis
orange1.1g007945m.g 0.5kb downstream 0.5kb downstream 500 false scaffold00126: 54157-54656 Citrus sinensis
orange1.1g007945m.g 1.0kb upstream 1.0kb upstream 6257 true scaffold00126: 54657-60913 Citrus sinensis
orange1.1g007945m.g 1.0kb upstream 1.0kb upstream 1000 false scaffold00126: 59914-60913 Citrus sinensis
orange1.1g007945m.g 1.0kb downstream 1.0kb downstream 6257 true scaffold00126: 53657-59913 Citrus sinensis
orange1.1g007945m.g 1.0kb downstream 1.0kb downstream 1000 false scaffold00126: 53657-54656 Citrus sinensis
orange1.1g007945m.g 2.0kb upstream 2.0kb upstream 7257 true scaffold00126: 54657-61913 Citrus sinensis
orange1.1g007945m.g 2.0kb upstream 2.0kb upstream 2000 false scaffold00126: 59914-61913 Citrus sinensis
orange1.1g007945m.g 2.0kb downstream 2.0kb downstream 7257 true scaffold00126: 52657-59913 Citrus sinensis
orange1.1g007945m.g 2.0kb downstream 2.0kb downstream 2000 false scaffold00126: 52657-54656 Citrus sinensis
orange1.1g007945m.g 5.0kb upstream 5.0kb upstream 10257 true scaffold00126: 54657-64913 Citrus sinensis
orange1.1g007945m.g 5.0kb upstream 5.0kb upstream 5000 false scaffold00126: 59914-64913 Citrus sinensis
orange1.1g007945m.g 5.0kb downstream 5.0kb downstream 10257 true scaffold00126: 49657-59913 Citrus sinensis
orange1.1g007945m.g 5.0kb downstream 5.0kb downstream 5000 false scaffold00126: 49657-54656 Citrus sinensis
orange1.1g007945m.g 10.0kb upstream 10.0kb upstream 15257 true scaffold00126: 54657-69913 Citrus sinensis
orange1.1g007945m.g 10.0kb upstream 10.0kb upstream 10000 false scaffold00126: 59914-69913 Citrus sinensis
orange1.1g007945m.g 10.0kb downstream 10.0kb downstream 15257 true scaffold00126: 44657-59913 Citrus sinensis
orange1.1g007945m.g 10.0kb downstream 10.0kb downstream 10000 false scaffold00126: 44657-54656 Citrus sinensis

8 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124340532 5266 SBM View MSA
124238742 5268 Malvidae View MSA
124061081 5270 Rosid View MSA
123739346 5271 Pentapetalae View MSA
122787287 5272 Eudicot View MSA
122042056 5273 Angiosperm View MSA
121350076 5274 Embryophyte View MSA
123425500 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain