Gene : orange1.1g048334m.g C. sinensis v1.1
Defline:  (1 of 13) 2.5.1.116 - Homogentisate geranylgeranyltransferase / HGGT Genomic Order:  19
Name:  ? orange1.1g048334m.g Secondary Identifier:  ? PAC:18101309
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Csinensis PWY-7436 Citrus sinensis pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
orange1.1g048334m.g 0.5kb upstream 0.5kb upstream 2747 true scaffold00327: 179536-182282 Citrus sinensis
orange1.1g048334m.g 0.5kb upstream 0.5kb upstream 500 false scaffold00327: 181783-182282 Citrus sinensis
orange1.1g048334m.g 0.5kb downstream 0.5kb downstream 2747 true scaffold00327: 179036-181782 Citrus sinensis
orange1.1g048334m.g 0.5kb downstream 0.5kb downstream 500 false scaffold00327: 179036-179535 Citrus sinensis
orange1.1g048334m.g 1.0kb upstream 1.0kb upstream 3247 true scaffold00327: 179536-182782 Citrus sinensis
orange1.1g048334m.g 1.0kb upstream 1.0kb upstream 1000 false scaffold00327: 181783-182782 Citrus sinensis
orange1.1g048334m.g 1.0kb downstream 1.0kb downstream 3247 true scaffold00327: 178536-181782 Citrus sinensis
orange1.1g048334m.g 1.0kb downstream 1.0kb downstream 1000 false scaffold00327: 178536-179535 Citrus sinensis
orange1.1g048334m.g 2.0kb upstream 2.0kb upstream 4247 true scaffold00327: 179536-183782 Citrus sinensis
orange1.1g048334m.g 2.0kb upstream 2.0kb upstream 2000 false scaffold00327: 181783-183782 Citrus sinensis
orange1.1g048334m.g 2.0kb downstream 2.0kb downstream 4247 true scaffold00327: 177536-181782 Citrus sinensis
orange1.1g048334m.g 2.0kb downstream 2.0kb downstream 2000 false scaffold00327: 177536-179535 Citrus sinensis
orange1.1g048334m.g 5.0kb upstream 5.0kb upstream 7247 true scaffold00327: 179536-186782 Citrus sinensis
orange1.1g048334m.g 5.0kb upstream 5.0kb upstream 5000 false scaffold00327: 181783-186782 Citrus sinensis
orange1.1g048334m.g 5.0kb downstream 5.0kb downstream 7247 true scaffold00327: 174536-181782 Citrus sinensis
orange1.1g048334m.g 5.0kb downstream 5.0kb downstream 5000 false scaffold00327: 174536-179535 Citrus sinensis
orange1.1g048334m.g 10.0kb upstream 10.0kb upstream 11488 true scaffold00327: 179536-191023 Citrus sinensis
orange1.1g048334m.g 10.0kb upstream 10.0kb upstream 9241 false scaffold00327: 181783-191023 Citrus sinensis
orange1.1g048334m.g 10.0kb downstream 10.0kb downstream 12247 true scaffold00327: 169536-181782 Citrus sinensis
orange1.1g048334m.g 10.0kb downstream 10.0kb downstream 10000 false scaffold00327: 169536-179535 Citrus sinensis

8 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121658057 5273 Angiosperm View MSA
124336295 5266 SBM View MSA
124180809 5268 Malvidae View MSA
124041001 5270 Rosid View MSA
123612085 5271 Pentapetalae View MSA
122646609 5272 Eudicot View MSA
120930074 5274 Embryophyte View MSA
123426888 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain