Gene : orange1.1g001826m.g C. sinensis v1.1
Defline:  (1 of 1) PTHR11777:SF18 - ALANINE--TRNA LIGASE, CYTOPLASMIC Genomic Order:  1
Name:  ? orange1.1g001826m.g Secondary Identifier:  ? PAC:18115864
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Csinensis TRNA-CHARGING-PWY Citrus sinensis pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
orange1.1g001826m.g 0.5kb upstream 0.5kb upstream 9900 true scaffold00151: 17463-27362 Citrus sinensis
orange1.1g001826m.g 0.5kb upstream 0.5kb upstream 500 false scaffold00151: 17463-17962 Citrus sinensis
orange1.1g001826m.g 0.5kb downstream 0.5kb downstream 9900 true scaffold00151: 17963-27862 Citrus sinensis
orange1.1g001826m.g 0.5kb downstream 0.5kb downstream 500 false scaffold00151: 27363-27862 Citrus sinensis
orange1.1g001826m.g 1.0kb upstream 1.0kb upstream 10400 true scaffold00151: 16963-27362 Citrus sinensis
orange1.1g001826m.g 1.0kb upstream 1.0kb upstream 1000 false scaffold00151: 16963-17962 Citrus sinensis
orange1.1g001826m.g 1.0kb downstream 1.0kb downstream 10400 true scaffold00151: 17963-28362 Citrus sinensis
orange1.1g001826m.g 1.0kb downstream 1.0kb downstream 1000 false scaffold00151: 27363-28362 Citrus sinensis
orange1.1g001826m.g 2.0kb upstream 2.0kb upstream 11400 true scaffold00151: 15963-27362 Citrus sinensis
orange1.1g001826m.g 2.0kb upstream 2.0kb upstream 2000 false scaffold00151: 15963-17962 Citrus sinensis
orange1.1g001826m.g 2.0kb downstream 2.0kb downstream 11400 true scaffold00151: 17963-29362 Citrus sinensis
orange1.1g001826m.g 2.0kb downstream 2.0kb downstream 2000 false scaffold00151: 27363-29362 Citrus sinensis
orange1.1g001826m.g 5.0kb upstream 5.0kb upstream 14400 true scaffold00151: 12963-27362 Citrus sinensis
orange1.1g001826m.g 5.0kb upstream 5.0kb upstream 5000 false scaffold00151: 12963-17962 Citrus sinensis
orange1.1g001826m.g 5.0kb downstream 5.0kb downstream 14400 true scaffold00151: 17963-32362 Citrus sinensis
orange1.1g001826m.g 5.0kb downstream 5.0kb downstream 5000 false scaffold00151: 27363-32362 Citrus sinensis
orange1.1g001826m.g 10.0kb upstream 10.0kb upstream 19400 true scaffold00151: 7963-27362 Citrus sinensis
orange1.1g001826m.g 10.0kb upstream 10.0kb upstream 10000 false scaffold00151: 7963-17962 Citrus sinensis
orange1.1g001826m.g 10.0kb downstream 10.0kb downstream 19400 true scaffold00151: 17963-37362 Citrus sinensis
orange1.1g001826m.g 10.0kb downstream 10.0kb downstream 10000 false scaffold00151: 27363-37362 Citrus sinensis

8 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124341952 5266 SBM View MSA
124240298 5268 Malvidae View MSA
124063784 5270 Rosid View MSA
123740226 5271 Pentapetalae View MSA
122791486 5272 Eudicot View MSA
122047019 5273 Angiosperm View MSA
121346985 5274 Embryophyte View MSA
123424131 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain