Gene : evm_27.TU.AmTr_v1.0_scaffold00137.17 A. trichopoda v1.0
Defline:  (1 of 4) 6.1.1.7 - Alanine--tRNA ligase / Alanyl-tRNA synthetase Genomic Order:  16
Name:  ? evm_27.TU.AmTr_v1.0_scaffold00137.17 Secondary Identifier:  ? PAC:31556711
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Atrichopoda TRNA-CHARGING-PWY Amborella trichopoda pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
evm_27.TU.AmTr_v1.0_scaffold00137.17 0.5kb upstream 0.5kb upstream 28686 true AmTr_v1.0_scaffold00137: 421577-450262 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00137.17 0.5kb upstream 0.5kb upstream 500 false AmTr_v1.0_scaffold00137: 449763-450262 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00137.17 0.5kb downstream 0.5kb downstream 28686 true AmTr_v1.0_scaffold00137: 421077-449762 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00137.17 0.5kb downstream 0.5kb downstream 500 false AmTr_v1.0_scaffold00137: 421077-421576 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00137.17 1.0kb upstream 1.0kb upstream 29186 true AmTr_v1.0_scaffold00137: 421577-450762 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00137.17 1.0kb upstream 1.0kb upstream 1000 false AmTr_v1.0_scaffold00137: 449763-450762 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00137.17 1.0kb downstream 1.0kb downstream 29186 true AmTr_v1.0_scaffold00137: 420577-449762 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00137.17 1.0kb downstream 1.0kb downstream 1000 false AmTr_v1.0_scaffold00137: 420577-421576 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00137.17 2.0kb upstream 2.0kb upstream 30186 true AmTr_v1.0_scaffold00137: 421577-451762 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00137.17 2.0kb upstream 2.0kb upstream 2000 false AmTr_v1.0_scaffold00137: 449763-451762 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00137.17 2.0kb downstream 2.0kb downstream 30186 true AmTr_v1.0_scaffold00137: 419577-449762 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00137.17 2.0kb downstream 2.0kb downstream 2000 false AmTr_v1.0_scaffold00137: 419577-421576 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00137.17 5.0kb upstream 5.0kb upstream 33186 true AmTr_v1.0_scaffold00137: 421577-454762 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00137.17 5.0kb upstream 5.0kb upstream 5000 false AmTr_v1.0_scaffold00137: 449763-454762 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00137.17 5.0kb downstream 5.0kb downstream 33186 true AmTr_v1.0_scaffold00137: 416577-449762 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00137.17 5.0kb downstream 5.0kb downstream 5000 false AmTr_v1.0_scaffold00137: 416577-421576 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00137.17 10.0kb upstream 10.0kb upstream 38186 true AmTr_v1.0_scaffold00137: 421577-459762 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00137.17 10.0kb upstream 10.0kb upstream 10000 false AmTr_v1.0_scaffold00137: 449763-459762 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00137.17 10.0kb downstream 10.0kb downstream 38186 true AmTr_v1.0_scaffold00137: 411577-449762 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00137.17 10.0kb downstream 10.0kb downstream 10000 false AmTr_v1.0_scaffold00137: 411577-421576 Amborella trichopoda

3 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122047019 5273 Angiosperm View MSA
121346985 5274 Embryophyte View MSA
123424131 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain