Gene : evm_27.TU.AmTr_v1.0_scaffold00106.109 A. trichopoda v1.0
Defline:  (1 of 1) PTHR11089:SF43 - NO-ASSOCIATED PROTEIN 1, CHLOROPLASTIC/MITOCHONDRIAL Genomic Order:  108
Name:  ? evm_27.TU.AmTr_v1.0_scaffold00106.109 Secondary Identifier:  ? PAC:31550262
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Atrichopoda PWY-6845 Amborella trichopoda pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
evm_27.TU.AmTr_v1.0_scaffold00106.109 0.5kb upstream 0.5kb upstream 10969 true AmTr_v1.0_scaffold00106: 1964743-1975711 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00106.109 0.5kb upstream 0.5kb upstream 500 false AmTr_v1.0_scaffold00106: 1964743-1965242 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00106.109 0.5kb downstream 0.5kb downstream 10969 true AmTr_v1.0_scaffold00106: 1965243-1976211 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00106.109 0.5kb downstream 0.5kb downstream 500 false AmTr_v1.0_scaffold00106: 1975712-1976211 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00106.109 1.0kb upstream 1.0kb upstream 11469 true AmTr_v1.0_scaffold00106: 1964243-1975711 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00106.109 1.0kb upstream 1.0kb upstream 1000 false AmTr_v1.0_scaffold00106: 1964243-1965242 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00106.109 1.0kb downstream 1.0kb downstream 11469 true AmTr_v1.0_scaffold00106: 1965243-1976711 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00106.109 1.0kb downstream 1.0kb downstream 1000 false AmTr_v1.0_scaffold00106: 1975712-1976711 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00106.109 2.0kb upstream 2.0kb upstream 12469 true AmTr_v1.0_scaffold00106: 1963243-1975711 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00106.109 2.0kb upstream 2.0kb upstream 2000 false AmTr_v1.0_scaffold00106: 1963243-1965242 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00106.109 2.0kb downstream 2.0kb downstream 12469 true AmTr_v1.0_scaffold00106: 1965243-1977711 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00106.109 2.0kb downstream 2.0kb downstream 2000 false AmTr_v1.0_scaffold00106: 1975712-1977711 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00106.109 5.0kb upstream 5.0kb upstream 15469 true AmTr_v1.0_scaffold00106: 1960243-1975711 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00106.109 5.0kb upstream 5.0kb upstream 5000 false AmTr_v1.0_scaffold00106: 1960243-1965242 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00106.109 5.0kb downstream 5.0kb downstream 15469 true AmTr_v1.0_scaffold00106: 1965243-1980711 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00106.109 5.0kb downstream 5.0kb downstream 5000 false AmTr_v1.0_scaffold00106: 1975712-1980711 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00106.109 10.0kb upstream 10.0kb upstream 20469 true AmTr_v1.0_scaffold00106: 1955243-1975711 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00106.109 10.0kb upstream 10.0kb upstream 10000 false AmTr_v1.0_scaffold00106: 1955243-1965242 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00106.109 10.0kb downstream 10.0kb downstream 20469 true AmTr_v1.0_scaffold00106: 1965243-1985711 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00106.109 10.0kb downstream 10.0kb downstream 10000 false AmTr_v1.0_scaffold00106: 1975712-1985711 Amborella trichopoda

3 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122045244 5273 Angiosperm View MSA
121346425 5274 Embryophyte View MSA
123426230 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain